c2pfam

AT1G80040.1 :

Domain Description Evalue Bits GA Start End
CUE CUE domain 6.8E-08 22 20.40 42 75
RraB Regulator of ribonuclease activity B 1.1E-05 16 23.30 59 93
Myb_DNA-bind_7 Myb DNA-binding like 0.33 1 31.00 60 78
DUF812 Protein of unknown function (DUF812) 7E-06 15 30.00 66 221
DUF29 Domain of unknown function DUF29 5.4E-05 13 21.60 131 211
DUF2228 Uncharacterised conserved protein (DUF2228) 6.9E-06 15 25.00 132 237
Myb_DNA-bind_7 Myb DNA-binding like 6.9E-05 12 31.00 142 182
Lebercilin Ciliary protein causing Leber congenital amaurosis disease 8.1E-05 12 34.30 145 223
LRS4 Monopolin complex subunit LRS4 0.00043 9 21.50 149 231
UPF0242 Uncharacterised protein family (UPF0242) 0.012 5 23.70 150 192
DUF5595 Domain of unknown function (DUF5595) 0.039 4 29.00 154 185
YabA Initiation control protein YabA 0.2 2 30.00 155 182
UPF0242 Uncharacterised protein family (UPF0242) 0.00013 12 23.70 191 237
YabA Initiation control protein YabA 0.0018 9 30.00 192 235
DUF5595 Domain of unknown function (DUF5595) 0.0065 6 29.00 205 234

248

CUE
RraB
Myb_DNA-bind_7
DUF812
DUF29
DUF2228
Myb_DNA-bind_7
Lebercilin
LRS4
UPF0242
DUF5595
YabA
UPF0242
YabA
DUF5595

References:

DUF29

DUF812

RraB

CUE
9388185 Role of Cue1p in ubiquitination and degradation at the ER surface. Science 1997;278:1806-1809.
11023840 Proteins of the endoplasmic-reticulum-associated degradation pathway: domain detection and function prediction. Biochem J 2000;351:527-535.
12573224 Ubiquitin Signals Protein Trafficking via Interaction with a Novel Ubiquitin Binding Domain in the Membrane Fusion Regulator, Vps9p. Curr Biol 2003;13:258-262.
12628920 A ubiquitin-binding motif required for intramolecular monoubiquitylation, the CUE domain. EMBO J 2003;22:1273-1281.
12787503 Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding. Cell 2003;113:621-630.

LRS4
11163190 Functional genomics identifies monopolin: a kinetochore protein required for segregation of homologs during meiosis i. Cell. 2000;103:1155-1168.
17627824 The kinetochore proteins Pcs1 and Mde4 and heterochromatin are required to prevent merotelic orientation. Curr Biol. 2007;17:1190-1200.
12689592 Kinetochore recruitment of two nucleolar proteins is required for homolog segregation in meiosis I. Dev Cell. 2003;4:535-548.

Myb_DNA-bind_7

Lebercilin

DUF5595

UPF0242

YabA

DUF2228

Domain	Description	Evalue	Bits	GA	Start	End
CUE	CUE domain	6.8E-08	22	20.40	42	75
RraB	Regulator of ribonuclease activity B	1.1E-05	16	23.30	59	93
Myb_DNA-bind_7	Myb DNA-binding like	0.33	1	31.00	60	78
DUF812	Protein of unknown function (DUF812)	7E-06	15	30.00	66	221
DUF29	Domain of unknown function DUF29	5.4E-05	13	21.60	131	211
DUF2228	Uncharacterised conserved protein (DUF2228)	6.9E-06	15	25.00	132	237
Myb_DNA-bind_7	Myb DNA-binding like	6.9E-05	12	31.00	142	182
Lebercilin	Ciliary protein causing Leber congenital amaurosis disease	8.1E-05	12	34.30	145	223
LRS4	Monopolin complex subunit LRS4	0.00043	9	21.50	149	231
UPF0242	Uncharacterised protein family (UPF0242)	0.012	5	23.70	150	192
DUF5595	Domain of unknown function (DUF5595)	0.039	4	29.00	154	185
YabA	Initiation control protein YabA	0.2	2	30.00	155	182
UPF0242	Uncharacterised protein family (UPF0242)	0.00013	12	23.70	191	237
YabA	Initiation control protein YabA	0.0018	9	30.00	192	235
DUF5595	Domain of unknown function (DUF5595)	0.0065	6	29.00	205	234