c2pfam

AT1G80270.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.2 1 27.00 172 209
TPR_19 Tetratricopeptide repeat 0.058 4 25.00 212 239
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-07 21 27.00 229 390
PPR_2 PPR repeat family 4E-05 14 30.00 229 270
PPR PPR repeat 1.4E-05 15 25.00 230 260
PPR_3 Pentatricopeptide repeat domain 0.0032 7 25.00 231 257
PPR_1 PPR repeat 0.054 3 23.80 242 256
PPR_3 Pentatricopeptide repeat domain 1.4E-09 28 25.00 251 309
PPR_2 PPR repeat family 0.0002 11 30.00 287 306
PPR_1 PPR repeat 0.015 5 23.80 293 306
PPR PPR repeat 0.0038 8 25.00 300 329
Mtf2 Mtf2 family 0.00029 10 27.00 311 340
PPR_2 PPR repeat family 0.17 2 30.00 314 335
PPR_3 Pentatricopeptide repeat domain 9.1E-05 12 25.00 320 378
TPR_14 Tetratricopeptide repeat 0.45 2 23.50 336 360
TPR_19 Tetratricopeptide repeat 0.25 2 25.00 340 358
PPR_2 PPR repeat family 0.013 6 30.00 342 371
PPR PPR repeat 0.0024 8 25.00 343 362
PPR_1 PPR repeat 0.0095 6 23.80 346 360
PPR PPR repeat 0.079 3 25.00 374 392
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.66 0 28.10 374 389
TPR_8 Tetratricopeptide repeat 0.78 0 25.70 374 386
WH2 WH2 motif 7.8E-05 12 20.70 404 418
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.18 2 28.10 407 429
PPR PPR repeat 0.00021 12 25.00 407 429
PPR_2 PPR repeat family 7.8E-07 19 30.00 407 444
PPR_1 PPR repeat 0.051 3 23.80 407 425
TPR_8 Tetratricopeptide repeat 0.0017 9 25.70 409 431
TPR_19 Tetratricopeptide repeat 0.037 5 25.00 411 432
DUF3368 Domain of unknown function (DUF3368) 0.086 3 27.30 413 443
PPR_long Pentacotripeptide-repeat region of PRORP 3.5E-07 20 27.00 417 498
PPR_3 Pentatricopeptide repeat domain 1.7E-05 15 25.00 422 482
PPR PPR repeat 1.2E-06 19 25.00 436 466
PPR_2 PPR repeat family 0.0041 7 30.00 441 478
DUF3368 Domain of unknown function (DUF3368) 0.0091 6 27.30 453 479
Imm51 Immunity protein 51 0.00077 9 29.80 456 496
PPR_1 PPR repeat 0.011 5 23.80 465 495
PPR_2 PPR repeat family 0.00025 11 30.00 471 497
PPR PPR repeat 1.1E-05 16 25.00 472 495
TPR_14 Tetratricopeptide repeat 0.019 6 23.50 472 496
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0047 7 28.10 476 502
TPR_19 Tetratricopeptide repeat 0.0024 8 25.00 476 500
TPR_8 Tetratricopeptide repeat 0.47 1 25.70 479 498
PPR_3 Pentatricopeptide repeat domain 0.0009 9 25.00 503 552
PPR_2 PPR repeat family 0.012 6 30.00 508 536
DUF3368 Domain of unknown function (DUF3368) 0.98 -1 27.30 511 537
PPR PPR repeat 0.00057 10 25.00 512 536
PPR_1 PPR repeat 0.68 0 23.80 516 533
PPR_long Pentacotripeptide-repeat region of PRORP 4.2E-05 13 27.00 517 573
Imm51 Immunity protein 51 0.57 0 29.80 524 558

596

PPR_long
TPR_19
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR_3
PPR_2
PPR_1
PPR
Mtf2
PPR_2
PPR_3
TPR_14
TPR_19
PPR_2
PPR
PPR_1
PPR
SPOB_a
TPR_8
WH2
SPOB_a
PPR
PPR_2
PPR_1
TPR_8
TPR_19
DUF3368
PPR_long
PPR_3
PPR
PPR_2
DUF3368
Imm51
PPR_1
PPR_2
PPR
TPR_14
SPOB_a
TPR_19
TPR_8
PPR_3
PPR_2
DUF3368
PPR
PPR_1
PPR_long
Imm51

References:

TPR_14

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

Imm51

WH2
9889097 Scar1 and the related Wiskott-Aldrich syndrome protein, WASP, regulate the actin cytoskeleton through the Arp2/3 complex. Curr Biol 1998;8:1347-1356.

Mtf2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

DUF3368

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.2	1	27.00	172	209
TPR_19	Tetratricopeptide repeat	0.058	4	25.00	212	239
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-07	21	27.00	229	390
PPR_2	PPR repeat family	4E-05	14	30.00	229	270
PPR	PPR repeat	1.4E-05	15	25.00	230	260
PPR_3	Pentatricopeptide repeat domain	0.0032	7	25.00	231	257
PPR_1	PPR repeat	0.054	3	23.80	242	256
PPR_3	Pentatricopeptide repeat domain	1.4E-09	28	25.00	251	309
PPR_2	PPR repeat family	0.0002	11	30.00	287	306
PPR_1	PPR repeat	0.015	5	23.80	293	306
PPR	PPR repeat	0.0038	8	25.00	300	329
Mtf2	Mtf2 family	0.00029	10	27.00	311	340
PPR_2	PPR repeat family	0.17	2	30.00	314	335
PPR_3	Pentatricopeptide repeat domain	9.1E-05	12	25.00	320	378
TPR_14	Tetratricopeptide repeat	0.45	2	23.50	336	360
TPR_19	Tetratricopeptide repeat	0.25	2	25.00	340	358
PPR_2	PPR repeat family	0.013	6	30.00	342	371
PPR	PPR repeat	0.0024	8	25.00	343	362
PPR_1	PPR repeat	0.0095	6	23.80	346	360
PPR	PPR repeat	0.079	3	25.00	374	392
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.66	0	28.10	374	389
TPR_8	Tetratricopeptide repeat	0.78	0	25.70	374	386
WH2	WH2 motif	7.8E-05	12	20.70	404	418
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.18	2	28.10	407	429
PPR	PPR repeat	0.00021	12	25.00	407	429
PPR_2	PPR repeat family	7.8E-07	19	30.00	407	444
PPR_1	PPR repeat	0.051	3	23.80	407	425
TPR_8	Tetratricopeptide repeat	0.0017	9	25.70	409	431
TPR_19	Tetratricopeptide repeat	0.037	5	25.00	411	432
DUF3368	Domain of unknown function (DUF3368)	0.086	3	27.30	413	443
PPR_long	Pentacotripeptide-repeat region of PRORP	3.5E-07	20	27.00	417	498
PPR_3	Pentatricopeptide repeat domain	1.7E-05	15	25.00	422	482
PPR	PPR repeat	1.2E-06	19	25.00	436	466
PPR_2	PPR repeat family	0.0041	7	30.00	441	478
DUF3368	Domain of unknown function (DUF3368)	0.0091	6	27.30	453	479
Imm51	Immunity protein 51	0.00077	9	29.80	456	496
PPR_1	PPR repeat	0.011	5	23.80	465	495
PPR_2	PPR repeat family	0.00025	11	30.00	471	497
PPR	PPR repeat	1.1E-05	16	25.00	472	495
TPR_14	Tetratricopeptide repeat	0.019	6	23.50	472	496
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0047	7	28.10	476	502
TPR_19	Tetratricopeptide repeat	0.0024	8	25.00	476	500
TPR_8	Tetratricopeptide repeat	0.47	1	25.70	479	498
PPR_3	Pentatricopeptide repeat domain	0.0009	9	25.00	503	552
PPR_2	PPR repeat family	0.012	6	30.00	508	536
DUF3368	Domain of unknown function (DUF3368)	0.98	-1	27.30	511	537
PPR	PPR repeat	0.00057	10	25.00	512	536
PPR_1	PPR repeat	0.68	0	23.80	516	533
PPR_long	Pentacotripeptide-repeat region of PRORP	4.2E-05	13	27.00	517	573
Imm51	Immunity protein 51	0.57	0	29.80	524	558