c2pfam

AT1G80350.1 :

Domain Description Evalue Bits GA Start End
AAA_16 AAA ATPase domain 7.4E-05 14 32.60 271 304
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 6.6E-05 14 26.60 273 309
AAA_7 P-loop containing dynein motor region 0.00017 12 25.80 273 307
TIP49 TIP49 C-terminus 1.9E-05 15 23.80 273 308
IstB_IS21 IstB-like ATP binding protein 3.5E-05 14 24.10 273 296
AAA_5 AAA domain (dynein-related subfamily) 2.2E-05 15 20.80 274 341
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.1E-07 22 20.00 274 343
AAA_2 AAA domain (Cdc48 subfamily) 1.3E-06 19 20.60 275 397
AAA_33 AAA domain 1.7E-06 19 27.00 275 315
AAA ATPase family associated with various cellular activities (AAA) 0 130 20.80 275 412
AAA_24 AAA domain 0.00033 11 27.00 275 344
AAA_28 AAA domain 0.00038 11 27.00 275 301
AAA_14 AAA domain 0.00054 11 27.00 275 343
AAA_18 AAA domain 0.00019 13 29.40 275 303
PhoH PhoH-like protein 9.7E-05 12 20.10 275 295
RNA_helicase RNA helicase 0.00018 13 21.50 275 300
Mg_chelatase Magnesium chelatase, subunit ChlI 1.7E-05 15 20.30 275 293
AAA_22 AAA domain 0.00015 13 27.00 276 295
NB-ARC NB-ARC domain 0.00023 11 23.50 276 449
AAA_17 AAA domain 0.00032 12 27.00 278 305
AAA_lid_3 AAA+ lid domain 2.8E-15 47 27.20 434 475
Vps4_C Vps4 C terminal oligomerisation domain 4E-14 43 21.30 476 521

523

AAA_16
TsaE
AAA_7
TIP49
IstB_IS21
AAA_5
RuvB_N
AAA_2
AAA_33
AAA
AAA_24
AAA_28
AAA_14
AAA_18
PhoH
RNA_helicase
Mg_chelatase
AAA_22
NB-ARC
AAA_17
AAA_lid_3
Vps4_C

References:

IstB_IS21

AAA_16

AAA_14

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

TsaE

AAA_lid_3

Vps4_C
16704411 The beta domain is required for Vps4p oligomerization into a functionally active ATPase. FEBS J. 2006;273:2357-2373.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_17

AAA_33

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_16	AAA ATPase domain	7.4E-05	14	32.60	271	304
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	6.6E-05	14	26.60	273	309
AAA_7	P-loop containing dynein motor region	0.00017	12	25.80	273	307
TIP49	TIP49 C-terminus	1.9E-05	15	23.80	273	308
IstB_IS21	IstB-like ATP binding protein	3.5E-05	14	24.10	273	296
AAA_5	AAA domain (dynein-related subfamily)	2.2E-05	15	20.80	274	341
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.1E-07	22	20.00	274	343
AAA_2	AAA domain (Cdc48 subfamily)	1.3E-06	19	20.60	275	397
AAA_33	AAA domain	1.7E-06	19	27.00	275	315
AAA	ATPase family associated with various cellular activities (AAA)	0	130	20.80	275	412
AAA_24	AAA domain	0.00033	11	27.00	275	344
AAA_28	AAA domain	0.00038	11	27.00	275	301
AAA_14	AAA domain	0.00054	11	27.00	275	343
AAA_18	AAA domain	0.00019	13	29.40	275	303
PhoH	PhoH-like protein	9.7E-05	12	20.10	275	295
RNA_helicase	RNA helicase	0.00018	13	21.50	275	300
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.7E-05	15	20.30	275	293
AAA_22	AAA domain	0.00015	13	27.00	276	295
NB-ARC	NB-ARC domain	0.00023	11	23.50	276	449
AAA_17	AAA domain	0.00032	12	27.00	278	305
AAA_lid_3	AAA+ lid domain	2.8E-15	47	27.20	434	475
Vps4_C	Vps4 C terminal oligomerisation domain	4E-14	43	21.30	476	521