c2pfam

AT1G80480.1 :

Domain Description Evalue Bits GA Start End
T2SSE Type II/IV secretion system protein 5.2E-06 16 24.90 71 124
RsgA_GTPase RsgA GTPase 0.00038 10 30.00 73 114
AAA_29 P-loop containing region of AAA domain 4.2E-05 13 27.00 85 107
AAA_16 AAA ATPase domain 1.3E-05 16 32.60 87 127
AAA_23 AAA domain 0.00029 11 27.00 90 109
cobW CobW/HypB/UreG, nucleotide-binding domain 0 195 20.70 90 276
SRPRB Signal recognition particle receptor beta subunit 8.9E-05 12 20.50 90 125
AAA_22 AAA domain 0.00011 12 27.00 92 114
ATPase_2 ATPase domain predominantly from Archaea 0.00013 12 33.20 92 120
MobB Molybdopterin guanine dinucleotide synthesis protein B 2.5E-05 14 21.60 94 132
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.00012 11 23.10 94 138
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.33 0 23.10 242 259
RsgA_GTPase RsgA GTPase 0.027 4 30.00 244 277
Zip ZIP Zinc transporter 5.7E-06 15 27.70 302 346
CobW_C Cobalamin synthesis protein cobW C-terminal domain 5.8E-23 71 20.60 349 443

444

T2SSE
RsgA_GTPase
AAA_29
AAA_16
AAA_23
cobW
SRPRB
AAA_22
ATPase_2
MobB
MeaB
MeaB
RsgA_GTPase
Zip
CobW_C

References:

AAA_16

CobW_C
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

RsgA_GTPase

T2SSE

Zip
9618566 Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency. Proc Natl Acad Sci U S A 1998;95:7220-7224.

MeaB

ATPase_2

AAA_29

AAA_23

AAA_22

MobB

Domain	Description	Evalue	Bits	GA	Start	End
T2SSE	Type II/IV secretion system protein	5.2E-06	16	24.90	71	124
RsgA_GTPase	RsgA GTPase	0.00038	10	30.00	73	114
AAA_29	P-loop containing region of AAA domain	4.2E-05	13	27.00	85	107
AAA_16	AAA ATPase domain	1.3E-05	16	32.60	87	127
AAA_23	AAA domain	0.00029	11	27.00	90	109
cobW	CobW/HypB/UreG, nucleotide-binding domain	0	195	20.70	90	276
SRPRB	Signal recognition particle receptor beta subunit	8.9E-05	12	20.50	90	125
AAA_22	AAA domain	0.00011	12	27.00	92	114
ATPase_2	ATPase domain predominantly from Archaea	0.00013	12	33.20	92	120
MobB	Molybdopterin guanine dinucleotide synthesis protein B	2.5E-05	14	21.60	94	132
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.00012	11	23.10	94	138
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.33	0	23.10	242	259
RsgA_GTPase	RsgA GTPase	0.027	4	30.00	244	277
Zip	ZIP Zinc transporter	5.7E-06	15	27.70	302	346
CobW_C	Cobalamin synthesis protein cobW C-terminal domain	5.8E-23	71	20.60	349	443