c2pfam

AT1G80550.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0013 8 30.00 56 91
PPR_long Pentacotripeptide-repeat region of PRORP 0.12 0 27.00 57 91
PPR PPR repeat 0.36 0 25.00 58 69
PPR_3 Pentatricopeptide repeat domain 0.39 0 25.00 60 93
PPR_long Pentacotripeptide-repeat region of PRORP 0.021 3 27.00 80 149
PPR_2 PPR repeat family 4.2E-06 16 30.00 81 127
PPR PPR repeat 0.025 4 25.00 83 109
PPR_1 PPR repeat 0.18 0 23.80 114 122
PPR_2 PPR repeat family 5.6E-05 12 30.00 115 162
PPR PPR repeat 0.15 2 25.00 118 145
PPR PPR repeat 0.004 6 25.00 153 173
PPR_2 PPR repeat family 0.05 3 30.00 154 173
PPR_1 PPR repeat 0.0019 7 23.80 157 173
PPR_2 PPR repeat family 0.00098 8 30.00 188 231
PPR PPR repeat 2.2E-05 14 25.00 193 220
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.014 3 21.90 213 236
PPR_3 Pentatricopeptide repeat domain 5.4E-06 15 25.00 214 270
PPR_1 PPR repeat 6.7E-07 18 23.80 219 251
PPR_2 PPR repeat family 1.1E-13 40 30.00 222 268
PPR PPR repeat 3.5E-09 25 25.00 225 254
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-12 34 27.00 234 368
PPR_3 Pentatricopeptide repeat domain 2.4E-14 42 25.00 246 304
PPR_1 PPR repeat 0.0014 7 23.80 255 268
PPR_2 PPR repeat family 2.2E-15 46 30.00 258 305
PPR PPR repeat 3.3E-06 16 25.00 260 290
PPR_3 Pentatricopeptide repeat domain 4.6E-12 35 25.00 280 335
PPR_1 PPR repeat 4.7E-16 47 23.80 288 320
PPR_2 PPR repeat family 2.7E-18 55 30.00 292 338
PPR PPR repeat 2.3E-09 26 25.00 296 325
PPR_3 Pentatricopeptide repeat domain 1.7E-07 20 25.00 315 369
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0062 4 21.90 315 372
PPR_1 PPR repeat 0.0015 7 23.80 323 334
PPR PPR repeat 6.4E-05 12 25.00 333 357
PPR_2 PPR repeat family 1.4E-05 14 30.00 333 370
PPR_3 Pentatricopeptide repeat domain 7.6E-08 21 25.00 348 405
PPR PPR repeat 0.0053 6 25.00 363 391
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.023 2 21.90 373 407
PPR_long Pentacotripeptide-repeat region of PRORP 9.7E-05 10 27.00 377 432
PPR_2 PPR repeat family 0.24 1 30.00 383 396
PPR_3 Pentatricopeptide repeat domain 0.00019 10 25.00 386 429
PPR_1 PPR repeat 0.00024 10 23.80 394 422
PPR_2 PPR repeat family 8.1E-09 24 30.00 394 429
PPR PPR repeat 5.8E-09 25 25.00 398 427

448

PPR_2
PPR_long
PPR
PPR_3
PPR_long
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR_2
PPR
ECSIT
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
ECSIT
PPR_1
PPR
PPR_2
PPR_3
PPR
ECSIT
PPR_long
PPR_2
PPR_3
PPR_1
PPR_2
PPR

References:

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0013	8	30.00	56	91
PPR_long	Pentacotripeptide-repeat region of PRORP	0.12	0	27.00	57	91
PPR	PPR repeat	0.36	0	25.00	58	69
PPR_3	Pentatricopeptide repeat domain	0.39	0	25.00	60	93
PPR_long	Pentacotripeptide-repeat region of PRORP	0.021	3	27.00	80	149
PPR_2	PPR repeat family	4.2E-06	16	30.00	81	127
PPR	PPR repeat	0.025	4	25.00	83	109
PPR_1	PPR repeat	0.18	0	23.80	114	122
PPR_2	PPR repeat family	5.6E-05	12	30.00	115	162
PPR	PPR repeat	0.15	2	25.00	118	145
PPR	PPR repeat	0.004	6	25.00	153	173
PPR_2	PPR repeat family	0.05	3	30.00	154	173
PPR_1	PPR repeat	0.0019	7	23.80	157	173
PPR_2	PPR repeat family	0.00098	8	30.00	188	231
PPR	PPR repeat	2.2E-05	14	25.00	193	220
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.014	3	21.90	213	236
PPR_3	Pentatricopeptide repeat domain	5.4E-06	15	25.00	214	270
PPR_1	PPR repeat	6.7E-07	18	23.80	219	251
PPR_2	PPR repeat family	1.1E-13	40	30.00	222	268
PPR	PPR repeat	3.5E-09	25	25.00	225	254
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-12	34	27.00	234	368
PPR_3	Pentatricopeptide repeat domain	2.4E-14	42	25.00	246	304
PPR_1	PPR repeat	0.0014	7	23.80	255	268
PPR_2	PPR repeat family	2.2E-15	46	30.00	258	305
PPR	PPR repeat	3.3E-06	16	25.00	260	290
PPR_3	Pentatricopeptide repeat domain	4.6E-12	35	25.00	280	335
PPR_1	PPR repeat	4.7E-16	47	23.80	288	320
PPR_2	PPR repeat family	2.7E-18	55	30.00	292	338
PPR	PPR repeat	2.3E-09	26	25.00	296	325
PPR_3	Pentatricopeptide repeat domain	1.7E-07	20	25.00	315	369
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0062	4	21.90	315	372
PPR_1	PPR repeat	0.0015	7	23.80	323	334
PPR	PPR repeat	6.4E-05	12	25.00	333	357
PPR_2	PPR repeat family	1.4E-05	14	30.00	333	370
PPR_3	Pentatricopeptide repeat domain	7.6E-08	21	25.00	348	405
PPR	PPR repeat	0.0053	6	25.00	363	391
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.023	2	21.90	373	407
PPR_long	Pentacotripeptide-repeat region of PRORP	9.7E-05	10	27.00	377	432
PPR_2	PPR repeat family	0.24	1	30.00	383	396
PPR_3	Pentatricopeptide repeat domain	0.00019	10	25.00	386	429
PPR_1	PPR repeat	0.00024	10	23.80	394	422
PPR_2	PPR repeat family	8.1E-09	24	30.00	394	429
PPR	PPR repeat	5.8E-09	25	25.00	398	427