c2pfam

AT1G06430.1 :

Domain Description Evalue Bits GA Start End
FtsH_ext FtsH Extracellular 1.7E-09 29 25.50 63 150
ATPase KaiC 0.25 1 26.60 103 146
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00033 11 26.60 244 279
Sigma54_activat Sigma-54 interaction domain 0.0004 11 20.20 250 274
AAA_16 AAA ATPase domain 1E-05 17 32.60 250 277
Zeta_toxin Zeta toxin 0.00056 10 20.10 251 277
AAA_7 P-loop containing dynein motor region 0.00029 11 25.80 254 274
TIP49 TIP49 C-terminus 4.7E-08 23 23.80 254 290
ATPase KaiC 0.0013 9 26.60 254 271
IstB_IS21 IstB-like ATP binding protein 9.8E-06 16 24.10 254 277
Mg_chelatase Magnesium chelatase, subunit ChlI 1.5E-05 15 20.30 254 274
AAA_5 AAA domain (dynein-related subfamily) 5.7E-07 20 20.80 255 325
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1E-06 19 20.00 255 289
AAA ATPase family associated with various cellular activities (AAA) 0 154 20.80 256 387
AAA_22 AAA domain 0.00014 13 27.00 256 276
AAA_2 AAA domain (Cdc48 subfamily) 1.3E-05 16 20.60 256 347
AAA_24 AAA domain 0.00066 10 27.00 256 273
AAA_33 AAA domain 4E-05 15 27.00 256 288
AAA_18 AAA domain 5.9E-05 14 29.40 256 311
AAA_28 AAA domain 8.3E-05 14 27.00 256 290
ABC_tran ABC transporter 0.00035 12 23.10 256 276
AAA_25 AAA domain 0.0014 9 27.00 256 272
AAA_17 AAA domain 1.8E-06 19 27.00 259 315
AAA_22 AAA domain 0.26 2 27.00 301 370
AAA_16 AAA ATPase domain 0.85 1 32.60 301 324
AAA_25 AAA domain 0.75 0 27.00 332 363
AAA_lid_3 AAA+ lid domain 2.9E-14 43 27.20 412 454
Peptidase_M41 Peptidase family M41 0 229 20.60 470 658
ATPase KaiC 0.15 2 26.60 589 662

685

FtsH_ext
ATPase
TsaE
Sigma54_activat
AAA_16
Zeta_toxin
AAA_7
TIP49
ATPase
IstB_IS21
Mg_chelatase
AAA_5
RuvB_N
AAA
AAA_22
AAA_2
AAA_24
AAA_33
AAA_18
AAA_28
ABC_tran
AAA_25
AAA_17
AAA_22
AAA_16
AAA_25
AAA_lid_3
Peptidase_M41
ATPase

References:

IstB_IS21

AAA_16

AAA_33

Peptidase_M41

TsaE

AAA_lid_3

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

FtsH_ext
12667449 Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 2003;11:659-669.
12732516 The ftsH gene of the wine bacterium Oenococcus oeni is involved in protection against environmental stress. Appl Environ Microbiol 2003;69:2512-2520.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_17

AAA_24

ATPase

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
FtsH_ext	FtsH Extracellular	1.7E-09	29	25.50	63	150
ATPase	KaiC	0.25	1	26.60	103	146
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00033	11	26.60	244	279
Sigma54_activat	Sigma-54 interaction domain	0.0004	11	20.20	250	274
AAA_16	AAA ATPase domain	1E-05	17	32.60	250	277
Zeta_toxin	Zeta toxin	0.00056	10	20.10	251	277
AAA_7	P-loop containing dynein motor region	0.00029	11	25.80	254	274
TIP49	TIP49 C-terminus	4.7E-08	23	23.80	254	290
ATPase	KaiC	0.0013	9	26.60	254	271
IstB_IS21	IstB-like ATP binding protein	9.8E-06	16	24.10	254	277
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.5E-05	15	20.30	254	274
AAA_5	AAA domain (dynein-related subfamily)	5.7E-07	20	20.80	255	325
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1E-06	19	20.00	255	289
AAA	ATPase family associated with various cellular activities (AAA)	0	154	20.80	256	387
AAA_22	AAA domain	0.00014	13	27.00	256	276
AAA_2	AAA domain (Cdc48 subfamily)	1.3E-05	16	20.60	256	347
AAA_24	AAA domain	0.00066	10	27.00	256	273
AAA_33	AAA domain	4E-05	15	27.00	256	288
AAA_18	AAA domain	5.9E-05	14	29.40	256	311
AAA_28	AAA domain	8.3E-05	14	27.00	256	290
ABC_tran	ABC transporter	0.00035	12	23.10	256	276
AAA_25	AAA domain	0.0014	9	27.00	256	272
AAA_17	AAA domain	1.8E-06	19	27.00	259	315
AAA_22	AAA domain	0.26	2	27.00	301	370
AAA_16	AAA ATPase domain	0.85	1	32.60	301	324
AAA_25	AAA domain	0.75	0	27.00	332	363
AAA_lid_3	AAA+ lid domain	2.9E-14	43	27.20	412	454
Peptidase_M41	Peptidase family M41	0	229	20.60	470	658
ATPase	KaiC	0.15	2	26.60	589	662