c2pfam

AT1G08840.1 :

Domain Description Evalue Bits GA Start End
Dna2 DNA replication factor Dna2 0 191 20.70 342 543
PDDEXK_1 PD-(D/E)XK nuclease superfamily 4.7E-09 26 21.10 400 606
ResIII Type III restriction enzyme, res subunit 1.3E-05 15 20.90 886 1022
AAA_30 AAA domain 3.9E-15 46 27.00 888 1053
UvrD-helicase UvrD/REP helicase 5.4E-08 22 20.30 888 966
AAA_11 AAA domain 2.7E-17 53 27.00 888 982
AAA_19 AAA domain 4E-12 36 25.10 892 1051
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.021 4 20.90 907 926
Helicase_RecD Helicase 9.4E-06 15 22.70 908 1029
AAA_11 AAA domain 1.7E-19 60 27.00 988 1055
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.0015 8 20.90 1004 1051
AAA_12 AAA domain 0 176 27.00 1065 1264
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.00043 10 20.90 1134 1260
UvrD_C UvrD-like helicase C-terminal domain 0.00081 8 25.60 1160 1214
AAA_19 AAA domain 0.091 3 25.10 1166 1218
UvrD_C UvrD-like helicase C-terminal domain 0.009 5 25.60 1249 1262

1296

Dna2
PDDEXK_1
ResIII
AAA_30
UvrD-helicase
AAA_11
AAA_19
Viral_helicase1
Helicase_RecD
AAA_11
Viral_helicase1
AAA_12
Viral_helicase1
UvrD_C
AAA_19
UvrD_C

References:

Helicase_RecD

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

ResIII

AAA_30

AAA_11

AAA_12

UvrD_C

Dna2
10880469 Genetic analyses of Schizosaccharomyces pombe dna2(+) reveal that dna2 plays an essential role in Okazaki fragment metabolism. Genetics. 2000;155:1055-1067.

AAA_19

PDDEXK_1

UvrD-helicase
9288744 Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. Cell 1997;90:635-647.

Domain	Description	Evalue	Bits	GA	Start	End
Dna2	DNA replication factor Dna2	0	191	20.70	342	543
PDDEXK_1	PD-(D/E)XK nuclease superfamily	4.7E-09	26	21.10	400	606
ResIII	Type III restriction enzyme, res subunit	1.3E-05	15	20.90	886	1022
AAA_30	AAA domain	3.9E-15	46	27.00	888	1053
UvrD-helicase	UvrD/REP helicase	5.4E-08	22	20.30	888	966
AAA_11	AAA domain	2.7E-17	53	27.00	888	982
AAA_19	AAA domain	4E-12	36	25.10	892	1051
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.021	4	20.90	907	926
Helicase_RecD	Helicase	9.4E-06	15	22.70	908	1029
AAA_11	AAA domain	1.7E-19	60	27.00	988	1055
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.0015	8	20.90	1004	1051
AAA_12	AAA domain	0	176	27.00	1065	1264
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.00043	10	20.90	1134	1260
UvrD_C	UvrD-like helicase C-terminal domain	0.00081	8	25.60	1160	1214
AAA_19	AAA domain	0.091	3	25.10	1166	1218
UvrD_C	UvrD-like helicase C-terminal domain	0.009	5	25.60	1249	1262