c2pfam

AT1G22830.1 :

Domain Description Evalue Bits GA Start End
RPN7 26S proteasome subunit RPN7 0.00069 8 25.30 26 99
PPR_2 PPR repeat family 0.97 -1 30.00 55 70
PPR PPR repeat 0.66 0 25.00 56 71
AEP1 ATPase expression protein 1 0.41 -1 27.00 139 180
PPR PPR repeat 8.3E-09 25 25.00 152 180
PPR_2 PPR repeat family 1.5E-11 34 30.00 152 195
PPR_3 Pentatricopeptide repeat domain 0.0043 6 25.00 153 194
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-06 15 27.00 162 202
PPR_1 PPR repeat 0.13 1 23.80 178 193
PPR_long Pentacotripeptide-repeat region of PRORP 0.0018 7 27.00 204 335
PPR_3 Pentatricopeptide repeat domain 2.8E-06 17 25.00 216 260
PPR_2 PPR repeat family 1.4E-06 18 30.00 219 248
AEP1 ATPase expression protein 1 0.062 1 27.00 220 260
PPR PPR repeat 1.2E-07 21 25.00 221 248
PPR_1 PPR repeat 2.3E-05 13 23.80 223 246
RPN7 26S proteasome subunit RPN7 0.075 2 25.30 224 262
TPR_19 Tetratricopeptide repeat 0.17 2 25.00 233 275
PPR_1 PPR repeat 4E-08 22 23.80 248 276
PPR_3 Pentatricopeptide repeat domain 2.6E-05 14 25.00 249 295
PPR_2 PPR repeat family 1.2E-12 37 30.00 249 295
PPR PPR repeat 1.1E-08 24 25.00 251 280
PPR_1 PPR repeat 0.099 2 23.80 280 291
PPR PPR repeat 0.00018 11 25.00 286 315
RPN7 26S proteasome subunit RPN7 0.37 0 25.30 353 390
PPR PPR repeat 0.00051 10 25.00 361 384
PPR_2 PPR repeat family 0.0079 6 30.00 361 384
PPR_1 PPR repeat 0.26 0 23.80 361 382
PPR_3 Pentatricopeptide repeat domain 0.0082 6 25.00 361 396
PPR_long Pentacotripeptide-repeat region of PRORP 0.084 1 27.00 373 440
PPR_1 PPR repeat 0.0037 6 23.80 389 414
PPR_2 PPR repeat family 3.6E-08 23 30.00 389 429
PPR PPR repeat 1E-06 18 25.00 389 419
PPR_3 Pentatricopeptide repeat domain 0.0039 7 25.00 410 440
PPR_1 PPR repeat 0.27 0 23.80 418 439
PPR_2 PPR repeat family 6.2E-06 16 30.00 460 488
PPR PPR repeat 1.9E-08 24 25.00 461 488
PPR_1 PPR repeat 8.4E-05 12 23.80 461 486
PPR_3 Pentatricopeptide repeat domain 0.011 5 25.00 461 487
RPN7 26S proteasome subunit RPN7 0.63 -1 25.30 463 488
TPR_19 Tetratricopeptide repeat 0.56 0 25.00 463 490
AEP1 ATPase expression protein 1 0.0024 6 27.00 463 500
PPR_long Pentacotripeptide-repeat region of PRORP 0.81 -2 27.00 465 489
PPR_1 PPR repeat 3.7E-07 19 23.80 488 516
PPR_3 Pentatricopeptide repeat domain 1.3E-07 21 25.00 489 535
PPR_2 PPR repeat family 4.1E-14 42 30.00 489 536
PPR PPR repeat 1.7E-11 33 25.00 491 521
PPR_long Pentacotripeptide-repeat region of PRORP 8.7E-07 18 27.00 510 583
PPR_1 PPR repeat 0.26 0 23.80 520 527
PPR PPR repeat 0.00065 9 25.00 526 552
PPR_3 Pentatricopeptide repeat domain 0.29 1 25.00 556 585
PPR PPR repeat 3E-07 20 25.00 563 585
PPR_2 PPR repeat family 0.0013 8 30.00 564 585
PPR_1 PPR repeat 4.4E-07 19 23.80 564 585
TPR_19 Tetratricopeptide repeat 0.0088 6 25.00 567 591
PPR_3 Pentatricopeptide repeat domain 0.19 1 25.00 591 610

703

RPN7
PPR_2
PPR
AEP1
PPR
PPR_2
PPR_3
PPR_long
PPR_1
PPR_long
PPR_3
PPR_2
AEP1
PPR
PPR_1
RPN7
TPR_19
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
RPN7
PPR
PPR_2
PPR_1
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
RPN7
TPR_19
AEP1
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR
PPR_2
PPR_1
TPR_19
PPR_3

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

AEP1

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
RPN7	26S proteasome subunit RPN7	0.00069	8	25.30	26	99
PPR_2	PPR repeat family	0.97	-1	30.00	55	70
PPR	PPR repeat	0.66	0	25.00	56	71
AEP1	ATPase expression protein 1	0.41	-1	27.00	139	180
PPR	PPR repeat	8.3E-09	25	25.00	152	180
PPR_2	PPR repeat family	1.5E-11	34	30.00	152	195
PPR_3	Pentatricopeptide repeat domain	0.0043	6	25.00	153	194
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-06	15	27.00	162	202
PPR_1	PPR repeat	0.13	1	23.80	178	193
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0018	7	27.00	204	335
PPR_3	Pentatricopeptide repeat domain	2.8E-06	17	25.00	216	260
PPR_2	PPR repeat family	1.4E-06	18	30.00	219	248
AEP1	ATPase expression protein 1	0.062	1	27.00	220	260
PPR	PPR repeat	1.2E-07	21	25.00	221	248
PPR_1	PPR repeat	2.3E-05	13	23.80	223	246
RPN7	26S proteasome subunit RPN7	0.075	2	25.30	224	262
TPR_19	Tetratricopeptide repeat	0.17	2	25.00	233	275
PPR_1	PPR repeat	4E-08	22	23.80	248	276
PPR_3	Pentatricopeptide repeat domain	2.6E-05	14	25.00	249	295
PPR_2	PPR repeat family	1.2E-12	37	30.00	249	295
PPR	PPR repeat	1.1E-08	24	25.00	251	280
PPR_1	PPR repeat	0.099	2	23.80	280	291
PPR	PPR repeat	0.00018	11	25.00	286	315
RPN7	26S proteasome subunit RPN7	0.37	0	25.30	353	390
PPR	PPR repeat	0.00051	10	25.00	361	384
PPR_2	PPR repeat family	0.0079	6	30.00	361	384
PPR_1	PPR repeat	0.26	0	23.80	361	382
PPR_3	Pentatricopeptide repeat domain	0.0082	6	25.00	361	396
PPR_long	Pentacotripeptide-repeat region of PRORP	0.084	1	27.00	373	440
PPR_1	PPR repeat	0.0037	6	23.80	389	414
PPR_2	PPR repeat family	3.6E-08	23	30.00	389	429
PPR	PPR repeat	1E-06	18	25.00	389	419
PPR_3	Pentatricopeptide repeat domain	0.0039	7	25.00	410	440
PPR_1	PPR repeat	0.27	0	23.80	418	439
PPR_2	PPR repeat family	6.2E-06	16	30.00	460	488
PPR	PPR repeat	1.9E-08	24	25.00	461	488
PPR_1	PPR repeat	8.4E-05	12	23.80	461	486
PPR_3	Pentatricopeptide repeat domain	0.011	5	25.00	461	487
RPN7	26S proteasome subunit RPN7	0.63	-1	25.30	463	488
TPR_19	Tetratricopeptide repeat	0.56	0	25.00	463	490
AEP1	ATPase expression protein 1	0.0024	6	27.00	463	500
PPR_long	Pentacotripeptide-repeat region of PRORP	0.81	-2	27.00	465	489
PPR_1	PPR repeat	3.7E-07	19	23.80	488	516
PPR_3	Pentatricopeptide repeat domain	1.3E-07	21	25.00	489	535
PPR_2	PPR repeat family	4.1E-14	42	30.00	489	536
PPR	PPR repeat	1.7E-11	33	25.00	491	521
PPR_long	Pentacotripeptide-repeat region of PRORP	8.7E-07	18	27.00	510	583
PPR_1	PPR repeat	0.26	0	23.80	520	527
PPR	PPR repeat	0.00065	9	25.00	526	552
PPR_3	Pentatricopeptide repeat domain	0.29	1	25.00	556	585
PPR	PPR repeat	3E-07	20	25.00	563	585
PPR_2	PPR repeat family	0.0013	8	30.00	564	585
PPR_1	PPR repeat	4.4E-07	19	23.80	564	585
TPR_19	Tetratricopeptide repeat	0.0088	6	25.00	567	591
PPR_3	Pentatricopeptide repeat domain	0.19	1	25.00	591	610