c2pfam

AT2G01740.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.024 5 30.00 2 28
PPR_long Pentacotripeptide-repeat region of PRORP 9E-06 16 27.00 47 120
PPR_1 PPR repeat 0.00048 10 23.80 50 82
PPR_2 PPR repeat family 3.5E-12 37 30.00 58 103
PPR PPR repeat 1.4E-05 16 25.00 58 87
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.00091 9 21.90 66 99
PPR_3 Pentatricopeptide repeat domain 1.4E-10 32 25.00 78 139
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.09 2 25.90 80 115
PPR_1 PPR repeat 5.3E-14 42 23.80 86 115
PPR PPR repeat 1.2E-07 22 25.00 92 118
DUF3368 Domain of unknown function (DUF3368) 0.94 0 27.30 103 129
PPR_1 PPR repeat 7.3E-05 13 23.80 125 147
PPR_2 PPR repeat family 5.1E-11 33 30.00 127 175
PPR PPR repeat 2.8E-05 15 25.00 130 157
PPR_long Pentacotripeptide-repeat region of PRORP 7.7E-09 26 27.00 143 250
PPR_1 PPR repeat 2E-11 34 23.80 157 190
PPR_2 PPR repeat family 6E-19 59 30.00 161 210
PPR_3 Pentatricopeptide repeat domain 1.8E-10 31 25.00 161 208
PPR PPR repeat 2.4E-07 21 25.00 164 192
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.021 4 25.90 165 224
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.68 1 26.10 165 209
PPR_3 Pentatricopeptide repeat domain 7.4E-09 26 25.00 186 230
ATP13 Mitochondrial ATPase expression 0.19 2 26.70 190 223
PPR_1 PPR repeat 8.1E-16 48 23.80 194 225
PPR_2 PPR repeat family 8.6E-21 64 30.00 196 245
PPR PPR repeat 4.6E-12 36 25.00 199 226
RPN7 26S proteasome subunit RPN7 0.004 7 25.30 205 231
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0074 7 26.10 207 280
TPR_2 Tetratricopeptide repeat 0.58 1 22.40 208 223
TPR_7 Tetratricopeptide repeat 0.032 5 27.90 208 223
TPR_19 Tetratricopeptide repeat 0.31 2 25.00 211 255
PPR_long Pentacotripeptide-repeat region of PRORP 8.7E-13 38 27.00 213 366
PPR_3 Pentatricopeptide repeat domain 8.2E-13 39 25.00 220 276
PPR_1 PPR repeat 1.3E-13 41 23.80 230 260
PPR_2 PPR repeat family 3.4E-17 53 30.00 232 278
PPR PPR repeat 1.3E-11 35 25.00 234 263
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.81 -1 25.90 235 259
RPN7 26S proteasome subunit RPN7 0.004 7 25.30 236 292
TPR_14 Tetratricopeptide repeat 0.48 2 23.50 238 268
TPR_7 Tetratricopeptide repeat 0.07 4 27.90 243 258
TPR_1 Tetratricopeptide repeat 0.34 2 20.40 245 258
ATP13 Mitochondrial ATPase expression 0.0029 8 26.70 257 296
PPR_1 PPR repeat 9.2E-10 29 23.80 264 294
PPR_2 PPR repeat family 1.4E-12 38 30.00 266 314
PPR PPR repeat 8.8E-07 20 25.00 270 298
PPR_3 Pentatricopeptide repeat domain 0.003 8 25.00 271 294
TPR_14 Tetratricopeptide repeat 0.44 2 23.50 275 295
RPN7 26S proteasome subunit RPN7 0.31 1 25.30 275 298
TPR_7 Tetratricopeptide repeat 0.87 1 27.90 278 295
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 279 295
TPR_6 Tetratricopeptide repeat 0.59 2 26.30 279 295
TPR_8 Tetratricopeptide repeat 0.51 2 25.70 280 293
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.039 3 25.90 280 367
DUF3368 Domain of unknown function (DUF3368) 0.051 4 27.30 285 310
PPR_3 Pentatricopeptide repeat domain 1.5E-10 32 25.00 291 348
PPR_1 PPR repeat 3.1E-09 27 23.80 298 330
PPR_2 PPR repeat family 2E-08 25 30.00 302 338
PPR PPR repeat 2E-07 22 25.00 305 333
DUF3368 Domain of unknown function (DUF3368) 0.65 0 27.30 316 332
TPR_19 Tetratricopeptide repeat 0.0053 8 25.00 316 367
ATP13 Mitochondrial ATPase expression 0.00011 13 26.70 317 366
PPR_long Pentacotripeptide-repeat region of PRORP 2.1E-05 14 27.00 317 399
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.5 0 21.90 323 363
PPR_1 PPR repeat 1.9E-07 21 23.80 333 362
PPR_2 PPR repeat family 4.3E-15 46 30.00 336 385
PPR PPR repeat 8.5E-09 26 25.00 339 369
BTAD Bacterial transcriptional activator domain 0.002 9 21.00 343 365
RPN7 26S proteasome subunit RPN7 0.18 2 25.30 344 367
TPR_14 Tetratricopeptide repeat 0.028 6 23.50 345 372
TPR_16 Tetratricopeptide repeat 0.032 5 32.70 345 368
TPR_1 Tetratricopeptide repeat 0.0075 7 20.40 346 366
TPR_2 Tetratricopeptide repeat 0.065 4 22.40 346 366
TPR_7 Tetratricopeptide repeat 0.038 5 27.90 346 364
TPR_8 Tetratricopeptide repeat 0.02 6 25.70 347 366
TPR_6 Tetratricopeptide repeat 0.068 5 26.30 347 367
PPR_3 Pentatricopeptide repeat domain 0.014 6 25.00 362 392
PPR_1 PPR repeat 6.1E-08 23 23.80 367 393
ATP13 Mitochondrial ATPase expression 0.72 0 26.70 370 395
PPR_2 PPR repeat family 5.1E-05 14 30.00 371 396
PPR PPR repeat 0.00012 13 25.00 375 396
TPR_1 Tetratricopeptide repeat 0.53 1 20.40 385 396
PPR_long Pentacotripeptide-repeat region of PRORP 6.3E-05 13 27.00 400 479
PPR_1 PPR repeat 2E-06 18 23.80 401 427
PPR_2 PPR repeat family 2E-10 31 30.00 402 449
PPR_3 Pentatricopeptide repeat domain 0.003 8 25.00 402 442
PPR PPR repeat 2.8E-09 27 25.00 404 433
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.2 3 26.10 410 466
PPR_3 Pentatricopeptide repeat domain 0.00046 11 25.00 424 469
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.37 0 25.90 431 467
PPR_1 PPR repeat 2.1E-10 31 23.80 433 465
PPR_2 PPR repeat family 9.4E-11 32 30.00 436 484
PPR PPR repeat 1.2E-07 22 25.00 439 469
PPR_long Pentacotripeptide-repeat region of PRORP 1.4E-06 18 27.00 450 538
PPR_3 Pentatricopeptide repeat domain 5.5E-09 27 25.00 460 518
PPR_1 PPR repeat 5.3E-09 26 23.80 468 499
PPR_2 PPR repeat family 7.6E-11 33 30.00 474 517
PPR PPR repeat 2.2E-09 28 25.00 475 504
ATP13 Mitochondrial ATPase expression 0.14 3 26.70 480 533
DUF3368 Domain of unknown function (DUF3368) 0.054 4 27.30 484 504
TPR_16 Tetratricopeptide repeat 0.5 2 32.70 484 508
TPR_19 Tetratricopeptide repeat 0.0025 9 25.00 490 534
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.93 -1 21.90 494 520
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.1 2 25.90 495 530
PPR_1 PPR repeat 0.00093 9 23.80 503 534
PPR_2 PPR repeat family 1.2E-06 19 30.00 506 539
PPR PPR repeat 8.2E-06 17 25.00 511 539
TPR_14 Tetratricopeptide repeat 0.091 4 23.50 511 534

559

PPR_2
PPR_long
PPR_1
PPR_2
PPR
ECSIT
PPR_3
MRP-S27
PPR_1
PPR
DUF3368
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR_3
PPR
MRP-S27
RPM2
PPR_3
ATP13
PPR_1
PPR_2
PPR
RPN7
RPM2
TPR_2
TPR_7
TPR_19
PPR_long
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
RPN7
TPR_14
TPR_7
TPR_1
ATP13
PPR_1
PPR_2
PPR
PPR_3
TPR_14
RPN7
TPR_7
TPR_19
TPR_6
TPR_8
MRP-S27
DUF3368
PPR_3
PPR_1
PPR_2
PPR
DUF3368
TPR_19
ATP13
PPR_long
ECSIT
PPR_1
PPR_2
PPR
BTAD
RPN7
TPR_14
TPR_16
TPR_1
TPR_2
TPR_7
TPR_8
TPR_6
PPR_3
PPR_1
ATP13
PPR_2
PPR
TPR_1
PPR_long
PPR_1
PPR_2
PPR_3
PPR
RPM2
PPR_3
MRP-S27
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
ATP13
DUF3368
TPR_16
TPR_19
ECSIT
MRP-S27
PPR_1
PPR_2
PPR
TPR_14

References:

TPR_7

TPR_6

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

TPR_16

ATP13

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

TPR_14

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

DUF3368

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.024	5	30.00	2	28
PPR_long	Pentacotripeptide-repeat region of PRORP	9E-06	16	27.00	47	120
PPR_1	PPR repeat	0.00048	10	23.80	50	82
PPR_2	PPR repeat family	3.5E-12	37	30.00	58	103
PPR	PPR repeat	1.4E-05	16	25.00	58	87
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.00091	9	21.90	66	99
PPR_3	Pentatricopeptide repeat domain	1.4E-10	32	25.00	78	139
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.09	2	25.90	80	115
PPR_1	PPR repeat	5.3E-14	42	23.80	86	115
PPR	PPR repeat	1.2E-07	22	25.00	92	118
DUF3368	Domain of unknown function (DUF3368)	0.94	0	27.30	103	129
PPR_1	PPR repeat	7.3E-05	13	23.80	125	147
PPR_2	PPR repeat family	5.1E-11	33	30.00	127	175
PPR	PPR repeat	2.8E-05	15	25.00	130	157
PPR_long	Pentacotripeptide-repeat region of PRORP	7.7E-09	26	27.00	143	250
PPR_1	PPR repeat	2E-11	34	23.80	157	190
PPR_2	PPR repeat family	6E-19	59	30.00	161	210
PPR_3	Pentatricopeptide repeat domain	1.8E-10	31	25.00	161	208
PPR	PPR repeat	2.4E-07	21	25.00	164	192
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.021	4	25.90	165	224
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.68	1	26.10	165	209
PPR_3	Pentatricopeptide repeat domain	7.4E-09	26	25.00	186	230
ATP13	Mitochondrial ATPase expression	0.19	2	26.70	190	223
PPR_1	PPR repeat	8.1E-16	48	23.80	194	225
PPR_2	PPR repeat family	8.6E-21	64	30.00	196	245
PPR	PPR repeat	4.6E-12	36	25.00	199	226
RPN7	26S proteasome subunit RPN7	0.004	7	25.30	205	231
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0074	7	26.10	207	280
TPR_2	Tetratricopeptide repeat	0.58	1	22.40	208	223
TPR_7	Tetratricopeptide repeat	0.032	5	27.90	208	223
TPR_19	Tetratricopeptide repeat	0.31	2	25.00	211	255
PPR_long	Pentacotripeptide-repeat region of PRORP	8.7E-13	38	27.00	213	366
PPR_3	Pentatricopeptide repeat domain	8.2E-13	39	25.00	220	276
PPR_1	PPR repeat	1.3E-13	41	23.80	230	260
PPR_2	PPR repeat family	3.4E-17	53	30.00	232	278
PPR	PPR repeat	1.3E-11	35	25.00	234	263
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.81	-1	25.90	235	259
RPN7	26S proteasome subunit RPN7	0.004	7	25.30	236	292
TPR_14	Tetratricopeptide repeat	0.48	2	23.50	238	268
TPR_7	Tetratricopeptide repeat	0.07	4	27.90	243	258
TPR_1	Tetratricopeptide repeat	0.34	2	20.40	245	258
ATP13	Mitochondrial ATPase expression	0.0029	8	26.70	257	296
PPR_1	PPR repeat	9.2E-10	29	23.80	264	294
PPR_2	PPR repeat family	1.4E-12	38	30.00	266	314
PPR	PPR repeat	8.8E-07	20	25.00	270	298
PPR_3	Pentatricopeptide repeat domain	0.003	8	25.00	271	294
TPR_14	Tetratricopeptide repeat	0.44	2	23.50	275	295
RPN7	26S proteasome subunit RPN7	0.31	1	25.30	275	298
TPR_7	Tetratricopeptide repeat	0.87	1	27.90	278	295
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	279	295
TPR_6	Tetratricopeptide repeat	0.59	2	26.30	279	295
TPR_8	Tetratricopeptide repeat	0.51	2	25.70	280	293
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.039	3	25.90	280	367
DUF3368	Domain of unknown function (DUF3368)	0.051	4	27.30	285	310
PPR_3	Pentatricopeptide repeat domain	1.5E-10	32	25.00	291	348
PPR_1	PPR repeat	3.1E-09	27	23.80	298	330
PPR_2	PPR repeat family	2E-08	25	30.00	302	338
PPR	PPR repeat	2E-07	22	25.00	305	333
DUF3368	Domain of unknown function (DUF3368)	0.65	0	27.30	316	332
TPR_19	Tetratricopeptide repeat	0.0053	8	25.00	316	367
ATP13	Mitochondrial ATPase expression	0.00011	13	26.70	317	366
PPR_long	Pentacotripeptide-repeat region of PRORP	2.1E-05	14	27.00	317	399
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.5	0	21.90	323	363
PPR_1	PPR repeat	1.9E-07	21	23.80	333	362
PPR_2	PPR repeat family	4.3E-15	46	30.00	336	385
PPR	PPR repeat	8.5E-09	26	25.00	339	369
BTAD	Bacterial transcriptional activator domain	0.002	9	21.00	343	365
RPN7	26S proteasome subunit RPN7	0.18	2	25.30	344	367
TPR_14	Tetratricopeptide repeat	0.028	6	23.50	345	372
TPR_16	Tetratricopeptide repeat	0.032	5	32.70	345	368
TPR_1	Tetratricopeptide repeat	0.0075	7	20.40	346	366
TPR_2	Tetratricopeptide repeat	0.065	4	22.40	346	366
TPR_7	Tetratricopeptide repeat	0.038	5	27.90	346	364
TPR_8	Tetratricopeptide repeat	0.02	6	25.70	347	366
TPR_6	Tetratricopeptide repeat	0.068	5	26.30	347	367
PPR_3	Pentatricopeptide repeat domain	0.014	6	25.00	362	392
PPR_1	PPR repeat	6.1E-08	23	23.80	367	393
ATP13	Mitochondrial ATPase expression	0.72	0	26.70	370	395
PPR_2	PPR repeat family	5.1E-05	14	30.00	371	396
PPR	PPR repeat	0.00012	13	25.00	375	396
TPR_1	Tetratricopeptide repeat	0.53	1	20.40	385	396
PPR_long	Pentacotripeptide-repeat region of PRORP	6.3E-05	13	27.00	400	479
PPR_1	PPR repeat	2E-06	18	23.80	401	427
PPR_2	PPR repeat family	2E-10	31	30.00	402	449
PPR_3	Pentatricopeptide repeat domain	0.003	8	25.00	402	442
PPR	PPR repeat	2.8E-09	27	25.00	404	433
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.2	3	26.10	410	466
PPR_3	Pentatricopeptide repeat domain	0.00046	11	25.00	424	469
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.37	0	25.90	431	467
PPR_1	PPR repeat	2.1E-10	31	23.80	433	465
PPR_2	PPR repeat family	9.4E-11	32	30.00	436	484
PPR	PPR repeat	1.2E-07	22	25.00	439	469
PPR_long	Pentacotripeptide-repeat region of PRORP	1.4E-06	18	27.00	450	538
PPR_3	Pentatricopeptide repeat domain	5.5E-09	27	25.00	460	518
PPR_1	PPR repeat	5.3E-09	26	23.80	468	499
PPR_2	PPR repeat family	7.6E-11	33	30.00	474	517
PPR	PPR repeat	2.2E-09	28	25.00	475	504
ATP13	Mitochondrial ATPase expression	0.14	3	26.70	480	533
DUF3368	Domain of unknown function (DUF3368)	0.054	4	27.30	484	504
TPR_16	Tetratricopeptide repeat	0.5	2	32.70	484	508
TPR_19	Tetratricopeptide repeat	0.0025	9	25.00	490	534
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.93	-1	21.90	494	520
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.1	2	25.90	495	530
PPR_1	PPR repeat	0.00093	9	23.80	503	534
PPR_2	PPR repeat family	1.2E-06	19	30.00	506	539
PPR	PPR repeat	8.2E-06	17	25.00	511	539
TPR_14	Tetratricopeptide repeat	0.091	4	23.50	511	534