c2pfam

AT2G01940.1 :

Domain Description Evalue Bits GA Start End
C1_4 TFIIH C1-like domain 0.004 7 24.60 67 96
zf_UBZ Ubiquitin-Binding Zinc Finger 0.0038 6 25.60 71 87
zf-C2H2_6 C2H2-type zinc finger 3.8E-07 20 25.00 72 96
zf-C2H2 Zinc finger, C2H2 type 6.3E-06 16 20.80 73 95
zf-met Zinc-finger of C2H2 type 1.4E-05 15 21.20 73 91
zf-MYST MYST family zinc finger domain 0.002 7 28.80 73 93
zf-C2H2_4 C2H2-type zinc finger 1.2E-05 16 27.00 73 95
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.00014 12 22.60 73 92
zf-MYST MYST family zinc finger domain 0.63 -1 28.80 108 118
C1_4 TFIIH C1-like domain 0.055 3 24.60 143 169
zf-MYST MYST family zinc finger domain 0.00015 11 28.80 148 173
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.0013 9 22.60 150 172
zf_UBZ Ubiquitin-Binding Zinc Finger 0.0053 6 25.60 150 162
zf-met Zinc-finger of C2H2 type 0.003 8 21.20 151 171
zf-C2H2 Zinc finger, C2H2 type 0.00016 12 20.80 152 172
zf-C2H2_4 C2H2-type zinc finger 0.0014 9 27.00 152 172
zinc_ribbon_4 zinc-ribbon domain 0.0065 6 30.30 152 164
zf-C2H2 Zinc finger, C2H2 type 0.00058 10 20.80 178 196
zf-C2H2_4 C2H2-type zinc finger 0.029 5 27.00 181 196
zf_UBZ Ubiquitin-Binding Zinc Finger 0.51 0 25.60 181 197
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.32 1 22.60 182 196
zf-C2H2_6 C2H2-type zinc finger 0.83 -1 25.00 182 192
DUF2514 Protein of unknown function (DUF2514) 5.4E-05 13 23.60 345 434
C1_4 TFIIH C1-like domain 0.0087 6 24.60 391 412
zinc_ribbon_4 zinc-ribbon domain 0.0037 7 30.30 401 412
zf_UBZ Ubiquitin-Binding Zinc Finger 0.15 1 25.60 403 413
zf-C2H2_6 C2H2-type zinc finger 0.28 1 25.00 405 413

445

C1_4
zf_UBZ
zf-C2H2_6
zf-C2H2
zf-met
zf-MYST
zf-C2H2_4
zf-C2H2_jaz
zf-MYST
C1_4
zf-MYST
zf-C2H2_jaz
zf_UBZ
zf-met
zf-C2H2
zf-C2H2_4
zinc_ribbon_4
zf-C2H2
zf-C2H2_4
zf_UBZ
zf-C2H2_jaz
zf-C2H2_6
DUF2514
C1_4
zinc_ribbon_4
zf_UBZ
zf-C2H2_6

References:

zf-C2H2
9171100 Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997;25:2464-2469.
12683994 Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1. J Mol Biol 2003;328:9-32.

zf-C2H2_6

zf-MYST

zf-C2H2_4

zf-met

zinc_ribbon_4

zf_UBZ

C1_4
10882739 Structural characterization of the cysteine-rich domain of TFIIH p44 subunit. J Biol Chem 2000;275:31963-31971.

DUF2514

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
C1_4	TFIIH C1-like domain	0.004	7	24.60	67	96
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.0038	6	25.60	71	87
zf-C2H2_6	C2H2-type zinc finger	3.8E-07	20	25.00	72	96
zf-C2H2	Zinc finger, C2H2 type	6.3E-06	16	20.80	73	95
zf-met	Zinc-finger of C2H2 type	1.4E-05	15	21.20	73	91
zf-MYST	MYST family zinc finger domain	0.002	7	28.80	73	93
zf-C2H2_4	C2H2-type zinc finger	1.2E-05	16	27.00	73	95
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.00014	12	22.60	73	92
zf-MYST	MYST family zinc finger domain	0.63	-1	28.80	108	118
C1_4	TFIIH C1-like domain	0.055	3	24.60	143	169
zf-MYST	MYST family zinc finger domain	0.00015	11	28.80	148	173
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.0013	9	22.60	150	172
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.0053	6	25.60	150	162
zf-met	Zinc-finger of C2H2 type	0.003	8	21.20	151	171
zf-C2H2	Zinc finger, C2H2 type	0.00016	12	20.80	152	172
zf-C2H2_4	C2H2-type zinc finger	0.0014	9	27.00	152	172
zinc_ribbon_4	zinc-ribbon domain	0.0065	6	30.30	152	164
zf-C2H2	Zinc finger, C2H2 type	0.00058	10	20.80	178	196
zf-C2H2_4	C2H2-type zinc finger	0.029	5	27.00	181	196
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.51	0	25.60	181	197
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.32	1	22.60	182	196
zf-C2H2_6	C2H2-type zinc finger	0.83	-1	25.00	182	192
DUF2514	Protein of unknown function (DUF2514)	5.4E-05	13	23.60	345	434
C1_4	TFIIH C1-like domain	0.0087	6	24.60	391	412
zinc_ribbon_4	zinc-ribbon domain	0.0037	7	30.30	401	412
zf_UBZ	Ubiquitin-Binding Zinc Finger	0.15	1	25.60	403	413
zf-C2H2_6	C2H2-type zinc finger	0.28	1	25.00	405	413