c2pfam

AT1G08050.1 :

Domain Description Evalue Bits GA Start End
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.2E-05 14 27.00 66 119
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 3.7E-05 14 27.30 67 110
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.2E-06 18 21.40 67 117
zf-UDP Zinc-binding RING-finger 3.7E-06 18 27.00 68 118
PHD PHD-finger 9.6E-06 16 27.90 68 114
zf-RING_2 Ring finger domain 2.1E-12 38 27.30 68 113
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.4E-08 25 27.00 68 112
zf-RING_5 zinc-RING finger domain 5.1E-07 20 27.90 68 114
zf-RING_4 RING/Ubox like zinc-binding domain 9E-07 19 27.00 69 116
zf-rbx1 RING-H2 zinc finger domain 2.3E-10 31 31.00 69 113
zf-RING_11 RING-like zinc finger 4.1E-13 39 27.00 69 98
zf-RING_UBOX RING-type zinc-finger 2.1E-05 15 25.20 69 110
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.8E-10 29 21.00 69 112
zf-RING-like RING-like domain 0.00017 12 21.60 87 112
zf-C3H2C3 Zinc-finger 0.0012 9 27.00 88 112
VWA_CoxE VWA domain containing CoxE-like protein 3E-10 30 26.30 197 313
VWA von Willebrand factor type A domain 2.9E-30 96 23.00 204 378
VWA_3 von Willebrand factor type A domain 3.9E-22 69 27.00 204 366
VWA_2 von Willebrand factor type A domain 6.4E-20 62 27.00 205 311
Vwaint VWA / Hh protein intein-like 5.2E-22 68 23.50 551 623

641

zf-C3HC4_3
Zn_ribbon_17
zf-ANAPC11
zf-UDP
PHD
zf-RING_2
zf-C3HC4_2
zf-RING_5
zf-RING_4
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-RING-like
zf-C3H2C3
VWA_CoxE
VWA
VWA_3
VWA_2
Vwaint

References:

VWA
1659389 More von Willebrand factor type A domains? Sequence similarities with malaria thrombospondin-related anonymous protein, dihydropyridine-sensitive calcium channel and inter-alpha-trypsin inhibitor. Biochem J 1991;279:908-911.

Zn_ribbon_17

zf-UDP

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

VWA_3

VWA_2

Vwaint

zf-ANAPC11

zf-RING_UBOX

VWA_CoxE
10433972 Sequence analysis, characterization and CO-specific transcription of the cox gene cluster on the megaplasmid pHCG3 of Oligotropha carboxidovorans. Gene 1999;236:115-124.

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

zf-C3HC4_3

zf-C3HC4_2

zf-C3H2C3

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.2E-05	14	27.00	66	119
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	3.7E-05	14	27.30	67	110
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.2E-06	18	21.40	67	117
zf-UDP	Zinc-binding RING-finger	3.7E-06	18	27.00	68	118
PHD	PHD-finger	9.6E-06	16	27.90	68	114
zf-RING_2	Ring finger domain	2.1E-12	38	27.30	68	113
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.4E-08	25	27.00	68	112
zf-RING_5	zinc-RING finger domain	5.1E-07	20	27.90	68	114
zf-RING_4	RING/Ubox like zinc-binding domain	9E-07	19	27.00	69	116
zf-rbx1	RING-H2 zinc finger domain	2.3E-10	31	31.00	69	113
zf-RING_11	RING-like zinc finger	4.1E-13	39	27.00	69	98
zf-RING_UBOX	RING-type zinc-finger	2.1E-05	15	25.20	69	110
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.8E-10	29	21.00	69	112
zf-RING-like	RING-like domain	0.00017	12	21.60	87	112
zf-C3H2C3	Zinc-finger	0.0012	9	27.00	88	112
VWA_CoxE	VWA domain containing CoxE-like protein	3E-10	30	26.30	197	313
VWA	von Willebrand factor type A domain	2.9E-30	96	23.00	204	378
VWA_3	von Willebrand factor type A domain	3.9E-22	69	27.00	204	366
VWA_2	von Willebrand factor type A domain	6.4E-20	62	27.00	205	311
Vwaint	VWA / Hh protein intein-like	5.2E-22	68	23.50	551	623