c2pfam

AT2G02150.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0042 8 30.00 119 148
PPR_3 Pentatricopeptide repeat domain 0.021 5 25.00 133 168
PPR PPR repeat 0.039 5 25.00 144 169
PPR_2 PPR repeat family 9.8E-05 13 30.00 195 225
PPR_long Pentacotripeptide-repeat region of PRORP 0.011 5 27.00 195 244
PPR_3 Pentatricopeptide repeat domain 0.31 1 25.00 196 225
PPR PPR repeat 2.6E-05 15 25.00 196 222
TPR_19 Tetratricopeptide repeat 0.58 1 25.00 200 216
TPR_7 Tetratricopeptide repeat 0.9 0 27.90 202 215
TPR_1 Tetratricopeptide repeat 0.0028 8 20.40 202 217
TPR_2 Tetratricopeptide repeat 0.023 5 22.40 202 217
PPR_1 PPR repeat 0.068 3 23.80 206 219
PPR_3 Pentatricopeptide repeat domain 6E-08 23 25.00 217 272
PPR_2 PPR repeat family 1.3E-12 38 30.00 225 274
PPR PPR repeat 4E-05 14 25.00 229 257
PPR_1 PPR repeat 0.33 1 23.80 231 253
Clathrin Region in Clathrin and VPS 0.69 0 23.60 236 281
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0093 5 25.90 241 288
PPR_long Pentacotripeptide-repeat region of PRORP 6.1E-07 19 27.00 244 346
PPR_1 PPR repeat 6.4E-15 45 23.80 257 289
PPR_2 PPR repeat family 6.3E-22 68 30.00 260 307
PPR PPR repeat 3.1E-12 36 25.00 263 293
Mtf2 Mtf2 family 0.012 6 27.00 264 300
TPR_19 Tetratricopeptide repeat 0.36 2 25.00 268 286
PPR_3 Pentatricopeptide repeat domain 3E-14 43 25.00 284 342
PPR_1 PPR repeat 2.8E-14 43 23.80 291 324
PPR_2 PPR repeat family 1.1E-19 61 30.00 295 344
Clathrin Region in Clathrin and VPS 0.24 1 23.60 296 347
PPR PPR repeat 4.3E-10 30 25.00 298 328
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.098 2 21.90 320 344
PPR_1 PPR repeat 1.3E-12 38 23.80 326 359
PPR_2 PPR repeat family 3.4E-19 59 30.00 330 379
PPR PPR repeat 3.6E-10 30 25.00 333 363
PPR_3 Pentatricopeptide repeat domain 9.6E-06 16 25.00 346 378
PPR_long Pentacotripeptide-repeat region of PRORP 3.4E-09 26 27.00 351 444
PPR_3 Pentatricopeptide repeat domain 2.8E-10 30 25.00 356 411
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.44 0 21.90 356 386
PPR_1 PPR repeat 6.2E-14 42 23.80 361 394
ATP13 Mitochondrial ATPase expression 0.25 2 26.70 362 389
PPR_2 PPR repeat family 2.9E-20 63 30.00 365 414
PPR PPR repeat 2.5E-09 27 25.00 368 397
Clathrin Region in Clathrin and VPS 0.0073 6 23.60 368 497
TPR_7 Tetratricopeptide repeat 0.0052 7 27.90 369 390
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0051 6 25.90 373 429
TPR_1 Tetratricopeptide repeat 0.28 2 20.40 376 390
PPR_3 Pentatricopeptide repeat domain 3.9E-11 33 25.00 392 445
PPR_1 PPR repeat 3.3E-12 36 23.80 397 428
PPR PPR repeat 1.3E-08 25 25.00 403 433
PPR_2 PPR repeat family 4.6E-13 40 30.00 407 449
DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 0.16 2 21.20 411 438
PPR_3 Pentatricopeptide repeat domain 3.1E-13 40 25.00 426 480
PPR_1 PPR repeat 6E-14 42 23.80 432 463
PPR_2 PPR repeat family 1E-11 35 30.00 436 472
PPR PPR repeat 2.2E-10 31 25.00 438 468
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.019 4 25.90 438 506
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-12 38 27.00 452 581
PPR_3 Pentatricopeptide repeat domain 3E-12 37 25.00 459 512
ATP13 Mitochondrial ATPase expression 0.0059 7 26.70 460 498
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.55 -1 21.90 462 486
PPR_1 PPR repeat 1.8E-09 28 23.80 467 498
PPR_2 PPR repeat family 6.9E-12 36 30.00 470 506
TPR_19 Tetratricopeptide repeat 0.48 1 25.00 471 498
PPR PPR repeat 3.7E-10 30 25.00 474 503
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.02 5 28.10 478 498
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.016 5 29.50 485 507
PPR_1 PPR repeat 2.7E-07 21 23.80 501 534
PPR_2 PPR repeat family 1.4E-07 22 30.00 505 542
PPR PPR repeat 7.1E-06 17 25.00 510 538
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.73 0 28.10 514 533
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.12 3 29.50 519 540
Mtf2 Mtf2 family 0.95 -1 27.00 524 542
PPR_3 Pentatricopeptide repeat domain 8.9E-11 32 25.00 529 585
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0049 6 25.90 533 597
PPR_1 PPR repeat 1.5E-06 18 23.80 537 569
Clathrin Region in Clathrin and VPS 0.49 1 23.60 539 574
TPR_19 Tetratricopeptide repeat 0.0086 7 25.00 540 570
PPR_2 PPR repeat family 2.3E-15 47 30.00 541 589
Mtf2 Mtf2 family 0.45 0 27.00 543 577
PPR PPR repeat 4.1E-09 27 25.00 544 572
TPR_2 Tetratricopeptide repeat 0.32 2 22.40 551 572
PPR_long Pentacotripeptide-repeat region of PRORP 4.4E-09 26 27.00 560 708
PPR_1 PPR repeat 1.9E-08 24 23.80 573 602
PPR PPR repeat 2.4E-07 21 25.00 578 603
ATP13 Mitochondrial ATPase expression 0.089 3 26.70 584 617
ATP13 Mitochondrial ATPase expression 0.26 1 26.70 601 642
PPR_3 Pentatricopeptide repeat domain 4.8E-05 14 25.00 606 655
PPR_1 PPR repeat 1.6E-10 31 23.80 608 640
Clathrin Region in Clathrin and VPS 0.76 0 23.60 610 631
PPR_2 PPR repeat family 5E-15 46 30.00 612 657
PPR PPR repeat 2.8E-09 27 25.00 615 644
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0028 7 25.90 618 670
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.085 2 21.90 628 650
PPR_1 PPR repeat 1.4E-07 21 23.80 642 674
PPR PPR repeat 1.2E-06 19 25.00 650 678
PPR_2 PPR repeat family 1.3E-06 19 30.00 650 692
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.57 -1 21.90 669 690
PPR_3 Pentatricopeptide repeat domain 0.00022 12 25.00 671 716
PPR_1 PPR repeat 0.001 9 23.80 678 709
PPR_2 PPR repeat family 3.3E-06 18 30.00 684 718
PPR PPR repeat 1.3E-06 19 25.00 685 714
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.46 1 28.10 690 712
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.12 3 29.50 698 721
PPR_2 PPR repeat family 0.67 1 30.00 716 746
DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 0.018 5 21.20 722 751

761

PPR_2
PPR_3
PPR
PPR_2
PPR_long
PPR_3
PPR
TPR_19
TPR_7
TPR_1
TPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_1
Clathrin
MRP-S27
PPR_long
PPR_1
PPR_2
PPR
Mtf2
TPR_19
PPR_3
PPR_1
PPR_2
Clathrin
PPR
ECSIT
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_3
ECSIT
PPR_1
ATP13
PPR_2
PPR
Clathrin
TPR_7
MRP-S27
TPR_1
PPR_3
PPR_1
PPR
PPR_2
DEP
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
PPR_long
PPR_3
ATP13
ECSIT
PPR_1
PPR_2
TPR_19
PPR
SPOB_a
Exog_C
PPR_1
PPR_2
PPR
SPOB_a
Exog_C
Mtf2
PPR_3
MRP-S27
PPR_1
Clathrin
TPR_19
PPR_2
Mtf2
PPR
TPR_2
PPR_long
PPR_1
PPR
ATP13
ATP13
PPR_3
PPR_1
Clathrin
PPR_2
PPR
MRP-S27
ECSIT
PPR_1
PPR
PPR_2
ECSIT
PPR_3
PPR_1
PPR_2
PPR
SPOB_a
Exog_C
PPR_2
DEP

References:

TPR_7

Exog_C

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

ATP13

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

DEP
8755244 Pleckstrin's repeat performance: a novel domain in G-protein signaling? Trends Biochem Sci 1996;21:245-246.
14614075 The DEP domain determines subcellular targeting of the GTPase activating protein RGS9 in vivo. J Neurosci 2003;23:10175-10181.
14625292 Absence of the RGS9.Gbeta5 GTPase-activating complex in photoreceptors of the R9AP knockout mouse. J Biol Chem 2004;279:1581-1584.
15353129 Characterization of function of three domains in dishevelled-1: DEP domain is responsible for membrane translocation of dishevelled-1. Cell Res. 2004;14:324-330.
15728856 D2 dopamine receptors colocalize regulator of G-protein signaling 9-2 (RGS9-2) via the RGS9 DEP domain, and RGS9 knock-out mice develop dyskinesias associated with dopamine pathways. J Neurosci. 2005;25:2157-2165.
16990133 DEP-domain-mediated regulation of GPCR signaling responses. Cell. 2006;126:1079-1093.
17011483 DEP domains: More than just membrane anchors. Dev Cell. 2006;11:436-438.

Mtf2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0042	8	30.00	119	148
PPR_3	Pentatricopeptide repeat domain	0.021	5	25.00	133	168
PPR	PPR repeat	0.039	5	25.00	144	169
PPR_2	PPR repeat family	9.8E-05	13	30.00	195	225
PPR_long	Pentacotripeptide-repeat region of PRORP	0.011	5	27.00	195	244
PPR_3	Pentatricopeptide repeat domain	0.31	1	25.00	196	225
PPR	PPR repeat	2.6E-05	15	25.00	196	222
TPR_19	Tetratricopeptide repeat	0.58	1	25.00	200	216
TPR_7	Tetratricopeptide repeat	0.9	0	27.90	202	215
TPR_1	Tetratricopeptide repeat	0.0028	8	20.40	202	217
TPR_2	Tetratricopeptide repeat	0.023	5	22.40	202	217
PPR_1	PPR repeat	0.068	3	23.80	206	219
PPR_3	Pentatricopeptide repeat domain	6E-08	23	25.00	217	272
PPR_2	PPR repeat family	1.3E-12	38	30.00	225	274
PPR	PPR repeat	4E-05	14	25.00	229	257
PPR_1	PPR repeat	0.33	1	23.80	231	253
Clathrin	Region in Clathrin and VPS	0.69	0	23.60	236	281
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0093	5	25.90	241	288
PPR_long	Pentacotripeptide-repeat region of PRORP	6.1E-07	19	27.00	244	346
PPR_1	PPR repeat	6.4E-15	45	23.80	257	289
PPR_2	PPR repeat family	6.3E-22	68	30.00	260	307
PPR	PPR repeat	3.1E-12	36	25.00	263	293
Mtf2	Mtf2 family	0.012	6	27.00	264	300
TPR_19	Tetratricopeptide repeat	0.36	2	25.00	268	286
PPR_3	Pentatricopeptide repeat domain	3E-14	43	25.00	284	342
PPR_1	PPR repeat	2.8E-14	43	23.80	291	324
PPR_2	PPR repeat family	1.1E-19	61	30.00	295	344
Clathrin	Region in Clathrin and VPS	0.24	1	23.60	296	347
PPR	PPR repeat	4.3E-10	30	25.00	298	328
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.098	2	21.90	320	344
PPR_1	PPR repeat	1.3E-12	38	23.80	326	359
PPR_2	PPR repeat family	3.4E-19	59	30.00	330	379
PPR	PPR repeat	3.6E-10	30	25.00	333	363
PPR_3	Pentatricopeptide repeat domain	9.6E-06	16	25.00	346	378
PPR_long	Pentacotripeptide-repeat region of PRORP	3.4E-09	26	27.00	351	444
PPR_3	Pentatricopeptide repeat domain	2.8E-10	30	25.00	356	411
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.44	0	21.90	356	386
PPR_1	PPR repeat	6.2E-14	42	23.80	361	394
ATP13	Mitochondrial ATPase expression	0.25	2	26.70	362	389
PPR_2	PPR repeat family	2.9E-20	63	30.00	365	414
PPR	PPR repeat	2.5E-09	27	25.00	368	397
Clathrin	Region in Clathrin and VPS	0.0073	6	23.60	368	497
TPR_7	Tetratricopeptide repeat	0.0052	7	27.90	369	390
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0051	6	25.90	373	429
TPR_1	Tetratricopeptide repeat	0.28	2	20.40	376	390
PPR_3	Pentatricopeptide repeat domain	3.9E-11	33	25.00	392	445
PPR_1	PPR repeat	3.3E-12	36	23.80	397	428
PPR	PPR repeat	1.3E-08	25	25.00	403	433
PPR_2	PPR repeat family	4.6E-13	40	30.00	407	449
DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	0.16	2	21.20	411	438
PPR_3	Pentatricopeptide repeat domain	3.1E-13	40	25.00	426	480
PPR_1	PPR repeat	6E-14	42	23.80	432	463
PPR_2	PPR repeat family	1E-11	35	30.00	436	472
PPR	PPR repeat	2.2E-10	31	25.00	438	468
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.019	4	25.90	438	506
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-12	38	27.00	452	581
PPR_3	Pentatricopeptide repeat domain	3E-12	37	25.00	459	512
ATP13	Mitochondrial ATPase expression	0.0059	7	26.70	460	498
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.55	-1	21.90	462	486
PPR_1	PPR repeat	1.8E-09	28	23.80	467	498
PPR_2	PPR repeat family	6.9E-12	36	30.00	470	506
TPR_19	Tetratricopeptide repeat	0.48	1	25.00	471	498
PPR	PPR repeat	3.7E-10	30	25.00	474	503
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.02	5	28.10	478	498
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.016	5	29.50	485	507
PPR_1	PPR repeat	2.7E-07	21	23.80	501	534
PPR_2	PPR repeat family	1.4E-07	22	30.00	505	542
PPR	PPR repeat	7.1E-06	17	25.00	510	538
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.73	0	28.10	514	533
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.12	3	29.50	519	540
Mtf2	Mtf2 family	0.95	-1	27.00	524	542
PPR_3	Pentatricopeptide repeat domain	8.9E-11	32	25.00	529	585
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0049	6	25.90	533	597
PPR_1	PPR repeat	1.5E-06	18	23.80	537	569
Clathrin	Region in Clathrin and VPS	0.49	1	23.60	539	574
TPR_19	Tetratricopeptide repeat	0.0086	7	25.00	540	570
PPR_2	PPR repeat family	2.3E-15	47	30.00	541	589
Mtf2	Mtf2 family	0.45	0	27.00	543	577
PPR	PPR repeat	4.1E-09	27	25.00	544	572
TPR_2	Tetratricopeptide repeat	0.32	2	22.40	551	572
PPR_long	Pentacotripeptide-repeat region of PRORP	4.4E-09	26	27.00	560	708
PPR_1	PPR repeat	1.9E-08	24	23.80	573	602
PPR	PPR repeat	2.4E-07	21	25.00	578	603
ATP13	Mitochondrial ATPase expression	0.089	3	26.70	584	617
ATP13	Mitochondrial ATPase expression	0.26	1	26.70	601	642
PPR_3	Pentatricopeptide repeat domain	4.8E-05	14	25.00	606	655
PPR_1	PPR repeat	1.6E-10	31	23.80	608	640
Clathrin	Region in Clathrin and VPS	0.76	0	23.60	610	631
PPR_2	PPR repeat family	5E-15	46	30.00	612	657
PPR	PPR repeat	2.8E-09	27	25.00	615	644
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0028	7	25.90	618	670
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.085	2	21.90	628	650
PPR_1	PPR repeat	1.4E-07	21	23.80	642	674
PPR	PPR repeat	1.2E-06	19	25.00	650	678
PPR_2	PPR repeat family	1.3E-06	19	30.00	650	692
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.57	-1	21.90	669	690
PPR_3	Pentatricopeptide repeat domain	0.00022	12	25.00	671	716
PPR_1	PPR repeat	0.001	9	23.80	678	709
PPR_2	PPR repeat family	3.3E-06	18	30.00	684	718
PPR	PPR repeat	1.3E-06	19	25.00	685	714
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.46	1	28.10	690	712
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.12	3	29.50	698	721
PPR_2	PPR repeat family	0.67	1	30.00	716	746
DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	0.018	5	21.20	722	751