c2pfam

AT2G02480.1 :

Domain Description Evalue Bits GA Start End
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1E-05 15 20.00 456 509
DNA_pol3_delta2 DNA polymerase III, delta subunit 1.1E-35 113 27.00 466 625
ResIII Type III restriction enzyme, res subunit 0.019 5 20.90 466 502
AAA_16 AAA ATPase domain 3.4E-05 14 32.60 470 506
AAA_5 AAA domain (dynein-related subfamily) 0.00015 11 20.80 487 513
AAA ATPase family associated with various cellular activities (AAA) 3.1E-10 30 20.80 487 621
AAA_22 AAA domain 1.9E-07 21 27.00 487 604
AAA_18 AAA domain 4.4E-05 14 29.40 489 607
ResIII Type III restriction enzyme, res subunit 0.0074 6 20.90 565 591
Bac_DnaA Bacterial dnaA protein 0.00067 9 20.40 569 673
DNA_pol3_delta DNA polymerase III, delta subunit 0.00015 11 20.50 585 673
DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III 1.6E-10 31 20.30 679 740
Bac_DnaA Bacterial dnaA protein 0.25 1 20.40 766 791

1218

RuvB_N
DNA_pol3_delta2
ResIII
AAA_16
AAA_5
AAA
AAA_22
AAA_18
ResIII
Bac_DnaA
DNA_pol3_delta
DNA_pol3_gamma3
Bac_DnaA

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_16

DNA_pol3_gamma3
17355988 The unstructured C-terminus of the tau subunit of Escherichia coli DNA polymerase III holoenzyme is the site of interaction with the alpha subunit. Nucleic Acids Res. 2007;35:2813-2824.

DNA_pol3_delta
11432857 The delta and delta ' subunits of the DNA polymerase III holoenzyme are essential for initiation complex formation and processive elongation. J Biol Chem 2001;276:35165-35175.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DNA_pol3_delta2

AAA_22

ResIII

Bac_DnaA

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1E-05	15	20.00	456	509
DNA_pol3_delta2	DNA polymerase III, delta subunit	1.1E-35	113	27.00	466	625
ResIII	Type III restriction enzyme, res subunit	0.019	5	20.90	466	502
AAA_16	AAA ATPase domain	3.4E-05	14	32.60	470	506
AAA_5	AAA domain (dynein-related subfamily)	0.00015	11	20.80	487	513
AAA	ATPase family associated with various cellular activities (AAA)	3.1E-10	30	20.80	487	621
AAA_22	AAA domain	1.9E-07	21	27.00	487	604
AAA_18	AAA domain	4.4E-05	14	29.40	489	607
ResIII	Type III restriction enzyme, res subunit	0.0074	6	20.90	565	591
Bac_DnaA	Bacterial dnaA protein	0.00067	9	20.40	569	673
DNA_pol3_delta	DNA polymerase III, delta subunit	0.00015	11	20.50	585	673
DNA_pol3_gamma3	DNA polymerase III subunits gamma and tau domain III	1.6E-10	31	20.30	679	740
Bac_DnaA	Bacterial dnaA protein	0.25	1	20.40	766	791