c2pfam

AT2G02560.1 :

Domain Description Evalue Bits GA Start End
HEAT HEAT repeat 0.8 0 23.50 52 78
Cnd1 non-SMC mitotic condensation complex subunit 1 0.068 3 26.40 53 118
U3snoRNP10 U3 small nucleolar RNA-associated protein 10 0.37 1 22.00 105 155
UME UME (NUC010) domain 0.036 4 21.00 149 207
API5 Apoptosis inhibitory protein 5 (API5) 0.011 4 22.20 163 236
Cnd1 non-SMC mitotic condensation complex subunit 1 0.007 6 26.40 170 210
HEAT_EZ HEAT-like repeat 0.37 1 27.00 170 197
HEAT_2 HEAT repeats 0.16 2 27.70 175 279
HEAT HEAT repeat 0.13 3 23.50 185 201
U3snoRNP10 U3 small nucleolar RNA-associated protein 10 0.033 4 22.00 197 237
UME UME (NUC010) domain 0.075 3 21.00 218 300
RIX1 rRNA processing/ribosome biogenesis 0.061 3 27.40 253 307
HEAT HEAT repeat 0.53 1 23.50 255 282
V-ATPase_H_N V-ATPase subunit H 0.08 2 20.10 268 269
HEAT_EZ HEAT-like repeat 0.33 1 27.00 271 298
Cnd1 non-SMC mitotic condensation complex subunit 1 0.032 4 26.40 340 401
HEAT_2 HEAT repeats 0.0009 9 27.70 340 387
HEAT HEAT repeat 2.5E-05 14 23.50 341 357
HEAT_EZ HEAT-like repeat 0.037 5 27.00 344 372
HEAT_PBS PBS lyase HEAT-like repeat 0.11 3 20.90 346 356
API5 Apoptosis inhibitory protein 5 (API5) 0.34 -1 22.20 364 404
RIX1 rRNA processing/ribosome biogenesis 4.5E-05 13 27.40 391 498
UME UME (NUC010) domain 0.61 0 21.00 421 456
TIP120 TATA-binding protein interacting (TIP20) 0.022 4 24.90 424 489
HEAT_EZ HEAT-like repeat 0.96 0 27.00 450 482
U3snoRNP10 U3 small nucleolar RNA-associated protein 10 0.61 0 22.00 561 596
HEAT_2 HEAT repeats 0.047 4 27.70 566 614
UME UME (NUC010) domain 0.026 4 21.00 567 646
HEAT_2 HEAT repeats 0.029 5 27.70 568 626
HEAT HEAT repeat 0.063 4 23.50 572 590
HEAT_EZ HEAT-like repeat 0.068 4 27.00 578 627
HEAT HEAT repeat 0.65 1 23.50 615 629
Cnd1 non-SMC mitotic condensation complex subunit 1 0.056 3 26.40 622 673
RIX1 rRNA processing/ribosome biogenesis 0.58 -1 27.40 635 714
V-ATPase_H_N V-ATPase subunit H 0.015 4 20.10 727 938
HEAT_2 HEAT repeats 0.0031 8 27.70 800 849
HEAT_2 HEAT repeats 0.028 5 27.70 818 881
HEAT_EZ HEAT-like repeat 0.15 3 27.00 833 880
HEAT HEAT repeat 0.0059 7 23.50 858 881
Arm Armadillo/beta-catenin-like repeat 0.015 5 20.60 863 881
TIP120 TATA-binding protein interacting (TIP20) 0.086 2 24.90 868 944
API5 Apoptosis inhibitory protein 5 (API5) 0.55 -2 22.20 894 939
Cnd1 non-SMC mitotic condensation complex subunit 1 0.037 4 26.40 895 964
V-ATPase_H_N V-ATPase subunit H 0.018 4 20.10 903 959
Arm Armadillo/beta-catenin-like repeat 0.67 0 20.60 929 957
HEAT_2 HEAT repeats 1.9E-05 15 27.70 930 988
HEAT HEAT repeat 0.00068 10 23.50 932 959
HEAT HEAT repeat 0.71 0 23.50 966 989
UME UME (NUC010) domain 0.24 1 21.00 1003 1035
Cnd1 non-SMC mitotic condensation complex subunit 1 0.00084 9 26.40 1007 1053
API5 Apoptosis inhibitory protein 5 (API5) 0.018 3 22.20 1008 1058
Arm Armadillo/beta-catenin-like repeat 0.036 4 20.60 1011 1031
HEAT HEAT repeat 0.00039 11 23.50 1011 1034
HEAT_2 HEAT repeats 0.00027 11 27.70 1014 1038
HEAT_EZ HEAT-like repeat 5.7E-05 13 27.00 1022 1052
HEAT_PBS PBS lyase HEAT-like repeat 0.023 6 20.90 1022 1035
TIP120 TATA-binding protein interacting (TIP20) 0 186 24.90 1040 1198
Cnd1 non-SMC mitotic condensation complex subunit 1 0.28 1 26.40 1075 1152
U3snoRNP10 U3 small nucleolar RNA-associated protein 10 0.00015 12 22.00 1106 1146
HEAT HEAT repeat 0.41 1 23.50 1125 1147

1219

HEAT
Cnd1
U3snoRNP10
UME
API5
Cnd1
HEAT_EZ
HEAT_2
HEAT
U3snoRNP10
UME
RIX1
HEAT
V-ATPase_H_N
HEAT_EZ
Cnd1
HEAT_2
HEAT
HEAT_EZ
HEAT_PBS
API5
RIX1
UME
TIP120
HEAT_EZ
U3snoRNP10
HEAT_2
UME
HEAT_2
HEAT
HEAT_EZ
HEAT
Cnd1
RIX1
V-ATPase_H_N
HEAT_2
HEAT_2
HEAT_EZ
HEAT
Arm
TIP120
API5
Cnd1
V-ATPase_H_N
Arm
HEAT_2
HEAT
HEAT
UME
Cnd1
API5
Arm
HEAT
HEAT_2
HEAT_EZ
HEAT_PBS
TIP120
Cnd1
U3snoRNP10
HEAT

References:

TIP120
10567521 TATA-Binding protein-interacting protein 120, TIP120, stimulates three classes of eukaryotic transcription via a unique mechanism. Mol Cell Biol. 1999;19:7951-7960.

V-ATPase_H_N
10954728 Regulation of yeast ectoapyrase ynd1p activity by activator subunit Vma13p of vacuolar H+-ATPase. J Biol Chem 2000;275:35592-35599.
18708638 Functional characterization of the N-terminal domain of subunit H (Vma13p) of the yeast vacuolar ATPase. J Biol Chem. 2008; [Epub ahead of print]
16141210 Structural and functional separation of the N- and C-terminal domains of the yeast V-ATPase subunit H. J Biol Chem. 2005;280:36978-36985.

UME
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

Arm
9298899 Three-dimensional structure of the armadillo repeat region of beta-catenin. Cell 1997;90:871-882.
8573337 Signal transduction of beta-catenin. Curr Opin Cell Biol 1995;7:634-640.
9309175 Armadillo and dTCF: a marriage made in the nucleus. Curr Opin Genet Dev 1997;7:459-466.
8259519 Association of the APC tumor suppressor protein with catenins. Science 1993;262:1734-1737.
8259518 Association of the APC gene product with beta-catenin. Science 1993;262:1731-1734.
2261639 The segment polarity gene armadillo encodes a functionally modular protein that is the Drosophila homolog of human plakoglobin. Cell 1990;63:1167-1176.

HEAT_PBS
8132596 Oligomeric structure, enzyme kinetics, and substrate specificity of the phycocyanin alpha subunit phycocyanobilin lyase. J Biol Chem 1994;269:8686-8694.
9023176 A role for cpeYZ in cyanobacterial phycoerythrin biosynthesis. J Bacteriol 1997;179:998-1006.
10708746 Novel activity of a phycobiliprotein lyase: both the attachment of phycocyanobilin and the isomerization to phycoviolobilin are catalyzed by the proteins PecE and PecF encoded by the phycoerythrocyanin operon. FEBS Lett 2000;469:9-13.
9882677 A polypeptide with similarity to phycocyanin alpha-subunit phycocyanobilin lyase involved in degradation of phycobilisomes. J Bacteriol 1999;181:610-617.

HEAT
7550332 HEAT repeats in the Huntington's disease protein. Nat Genet 1995;11:115-116.
9989501 The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs. Cell 1999;96:99-110.

HEAT_EZ

Cnd1

RIX1

API5
10393420 Molecular cloning and fine mapping of API5L1, a novel human gene strongly related to an antiapoptotic gene. Cytogenet Cell Genet 1999;84:164-166.
9307294 AAC-11, a novel cDNA that inhibits apoptosis after growth factor withdrawal. Cancer Res 1997;57:4063-4069.

U3snoRNP10
2686980 A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability. EMBO J. 1989;8:4015-4024.

HEAT_2

Domain	Description	Evalue	Bits	GA	Start	End
HEAT	HEAT repeat	0.8	0	23.50	52	78
Cnd1	non-SMC mitotic condensation complex subunit 1	0.068	3	26.40	53	118
U3snoRNP10	U3 small nucleolar RNA-associated protein 10	0.37	1	22.00	105	155
UME	UME (NUC010) domain	0.036	4	21.00	149	207
API5	Apoptosis inhibitory protein 5 (API5)	0.011	4	22.20	163	236
Cnd1	non-SMC mitotic condensation complex subunit 1	0.007	6	26.40	170	210
HEAT_EZ	HEAT-like repeat	0.37	1	27.00	170	197
HEAT_2	HEAT repeats	0.16	2	27.70	175	279
HEAT	HEAT repeat	0.13	3	23.50	185	201
U3snoRNP10	U3 small nucleolar RNA-associated protein 10	0.033	4	22.00	197	237
UME	UME (NUC010) domain	0.075	3	21.00	218	300
RIX1	rRNA processing/ribosome biogenesis	0.061	3	27.40	253	307
HEAT	HEAT repeat	0.53	1	23.50	255	282
V-ATPase_H_N	V-ATPase subunit H	0.08	2	20.10	268	269
HEAT_EZ	HEAT-like repeat	0.33	1	27.00	271	298
Cnd1	non-SMC mitotic condensation complex subunit 1	0.032	4	26.40	340	401
HEAT_2	HEAT repeats	0.0009	9	27.70	340	387
HEAT	HEAT repeat	2.5E-05	14	23.50	341	357
HEAT_EZ	HEAT-like repeat	0.037	5	27.00	344	372
HEAT_PBS	PBS lyase HEAT-like repeat	0.11	3	20.90	346	356
API5	Apoptosis inhibitory protein 5 (API5)	0.34	-1	22.20	364	404
RIX1	rRNA processing/ribosome biogenesis	4.5E-05	13	27.40	391	498
UME	UME (NUC010) domain	0.61	0	21.00	421	456
TIP120	TATA-binding protein interacting (TIP20)	0.022	4	24.90	424	489
HEAT_EZ	HEAT-like repeat	0.96	0	27.00	450	482
U3snoRNP10	U3 small nucleolar RNA-associated protein 10	0.61	0	22.00	561	596
HEAT_2	HEAT repeats	0.047	4	27.70	566	614
UME	UME (NUC010) domain	0.026	4	21.00	567	646
HEAT_2	HEAT repeats	0.029	5	27.70	568	626
HEAT	HEAT repeat	0.063	4	23.50	572	590
HEAT_EZ	HEAT-like repeat	0.068	4	27.00	578	627
HEAT	HEAT repeat	0.65	1	23.50	615	629
Cnd1	non-SMC mitotic condensation complex subunit 1	0.056	3	26.40	622	673
RIX1	rRNA processing/ribosome biogenesis	0.58	-1	27.40	635	714
V-ATPase_H_N	V-ATPase subunit H	0.015	4	20.10	727	938
HEAT_2	HEAT repeats	0.0031	8	27.70	800	849
HEAT_2	HEAT repeats	0.028	5	27.70	818	881
HEAT_EZ	HEAT-like repeat	0.15	3	27.00	833	880
HEAT	HEAT repeat	0.0059	7	23.50	858	881
Arm	Armadillo/beta-catenin-like repeat	0.015	5	20.60	863	881
TIP120	TATA-binding protein interacting (TIP20)	0.086	2	24.90	868	944
API5	Apoptosis inhibitory protein 5 (API5)	0.55	-2	22.20	894	939
Cnd1	non-SMC mitotic condensation complex subunit 1	0.037	4	26.40	895	964
V-ATPase_H_N	V-ATPase subunit H	0.018	4	20.10	903	959
Arm	Armadillo/beta-catenin-like repeat	0.67	0	20.60	929	957
HEAT_2	HEAT repeats	1.9E-05	15	27.70	930	988
HEAT	HEAT repeat	0.00068	10	23.50	932	959
HEAT	HEAT repeat	0.71	0	23.50	966	989
UME	UME (NUC010) domain	0.24	1	21.00	1003	1035
Cnd1	non-SMC mitotic condensation complex subunit 1	0.00084	9	26.40	1007	1053
API5	Apoptosis inhibitory protein 5 (API5)	0.018	3	22.20	1008	1058
Arm	Armadillo/beta-catenin-like repeat	0.036	4	20.60	1011	1031
HEAT	HEAT repeat	0.00039	11	23.50	1011	1034
HEAT_2	HEAT repeats	0.00027	11	27.70	1014	1038
HEAT_EZ	HEAT-like repeat	5.7E-05	13	27.00	1022	1052
HEAT_PBS	PBS lyase HEAT-like repeat	0.023	6	20.90	1022	1035
TIP120	TATA-binding protein interacting (TIP20)	0	186	24.90	1040	1198
Cnd1	non-SMC mitotic condensation complex subunit 1	0.28	1	26.40	1075	1152
U3snoRNP10	U3 small nucleolar RNA-associated protein 10	0.00015	12	22.00	1106	1146
HEAT	HEAT repeat	0.41	1	23.50	1125	1147