c2pfam

AT2G02980.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.011 4 27.00 65 147
PPR_1 PPR repeat 0.054 3 23.80 91 104
PPR_2 PPR repeat family 1.9E-10 30 30.00 92 140
PPR_3 Pentatricopeptide repeat domain 0.00011 12 25.00 92 139
PPR PPR repeat 1.9E-06 17 25.00 95 125
PPR_1 PPR repeat 0.091 2 23.80 123 137
PPR_long Pentacotripeptide-repeat region of PRORP 0.0014 7 27.00 128 246
PPR PPR repeat 0.48 1 25.00 134 155
PPR_3 Pentatricopeptide repeat domain 0.00012 12 25.00 159 205
PPR_2 PPR repeat family 0.0025 7 30.00 163 189
PPR PPR repeat 0.0054 7 25.00 169 191
PPR_1 PPR repeat 0.067 2 23.80 169 189
RPN7 26S proteasome subunit RPN7 0.35 0 25.30 170 195
PPR_1 PPR repeat 3.9E-10 29 23.80 191 222
PPR_3 Pentatricopeptide repeat domain 5.1E-06 16 25.00 191 240
PPR_2 PPR repeat family 5.6E-16 48 30.00 193 240
PPR_long Pentacotripeptide-repeat region of PRORP 0.0016 7 27.00 196 293
PPR PPR repeat 9.4E-12 34 25.00 196 224
TPR_14 Tetratricopeptide repeat 0.58 1 23.50 201 221
RPN7 26S proteasome subunit RPN7 0.0014 8 25.30 267 298
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-07 21 27.00 268 347
PPR_2 PPR repeat family 5.1E-05 13 30.00 269 294
PPR_3 Pentatricopeptide repeat domain 0.0015 8 25.00 269 294
PPR PPR repeat 1.2E-07 21 25.00 269 293
PPR_1 PPR repeat 5.9E-07 19 23.80 269 292
TPR_19 Tetratricopeptide repeat 0.019 5 25.00 279 324
PPR_2 PPR repeat family 2.3E-11 33 30.00 294 342
TPR_14 Tetratricopeptide repeat 0.026 5 23.50 297 333
PPR PPR repeat 1.6E-08 24 25.00 298 327
RPN7 26S proteasome subunit RPN7 0.044 3 25.30 298 332
PPR_1 PPR repeat 0.055 3 23.80 299 323
PPR_3 Pentatricopeptide repeat domain 1.5E-06 18 25.00 299 341
DYW_deaminase DYW family of nucleic acid deaminases 0.94 -1 31.60 305 326
PPR_long Pentacotripeptide-repeat region of PRORP 1.4E-08 24 27.00 310 393
TPR_19 Tetratricopeptide repeat 0.3 1 25.00 318 354
PPR_1 PPR repeat 0.0029 7 23.80 326 358
PPR PPR repeat 3.9E-06 16 25.00 333 360
TPR_14 Tetratricopeptide repeat 0.034 5 23.50 335 361
PPR_2 PPR repeat family 7E-05 12 30.00 337 377
PPR_long Pentacotripeptide-repeat region of PRORP 0.0018 7 27.00 348 425
PPR_3 Pentatricopeptide repeat domain 0.014 5 25.00 360 393
PPR_1 PPR repeat 2.6E-06 17 23.80 362 392
PPR_2 PPR repeat family 0.031 4 30.00 365 392
PPR PPR repeat 3.2E-05 14 25.00 370 392
TPR_19 Tetratricopeptide repeat 0.023 5 25.00 373 395
TPR_14 Tetratricopeptide repeat 0.019 5 23.50 374 408
TPR_14 Tetratricopeptide repeat 0.23 2 23.50 400 430
PPR PPR repeat 0.028 4 25.00 402 421
PPR_3 Pentatricopeptide repeat domain 0.17 1 25.00 405 425
PPR PPR repeat 0.0053 7 25.00 436 462
DYW_deaminase DYW family of nucleic acid deaminases 1.5E-38 121 31.60 468 593

603

PPR_long
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR_long
PPR
PPR_3
PPR_2
PPR
PPR_1
RPN7
PPR_1
PPR_3
PPR_2
PPR_long
PPR
TPR_14
RPN7
PPR_long
PPR_2
PPR_3
PPR
PPR_1
TPR_19
PPR_2
TPR_14
PPR
RPN7
PPR_1
PPR_3
DYW_deaminase
PPR_long
TPR_19
PPR_1
PPR
TPR_14
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_19
TPR_14
TPR_14
PPR
PPR_3
PPR
DYW_deaminase

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_19

DYW_deaminase

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.011	4	27.00	65	147
PPR_1	PPR repeat	0.054	3	23.80	91	104
PPR_2	PPR repeat family	1.9E-10	30	30.00	92	140
PPR_3	Pentatricopeptide repeat domain	0.00011	12	25.00	92	139
PPR	PPR repeat	1.9E-06	17	25.00	95	125
PPR_1	PPR repeat	0.091	2	23.80	123	137
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0014	7	27.00	128	246
PPR	PPR repeat	0.48	1	25.00	134	155
PPR_3	Pentatricopeptide repeat domain	0.00012	12	25.00	159	205
PPR_2	PPR repeat family	0.0025	7	30.00	163	189
PPR	PPR repeat	0.0054	7	25.00	169	191
PPR_1	PPR repeat	0.067	2	23.80	169	189
RPN7	26S proteasome subunit RPN7	0.35	0	25.30	170	195
PPR_1	PPR repeat	3.9E-10	29	23.80	191	222
PPR_3	Pentatricopeptide repeat domain	5.1E-06	16	25.00	191	240
PPR_2	PPR repeat family	5.6E-16	48	30.00	193	240
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0016	7	27.00	196	293
PPR	PPR repeat	9.4E-12	34	25.00	196	224
TPR_14	Tetratricopeptide repeat	0.58	1	23.50	201	221
RPN7	26S proteasome subunit RPN7	0.0014	8	25.30	267	298
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-07	21	27.00	268	347
PPR_2	PPR repeat family	5.1E-05	13	30.00	269	294
PPR_3	Pentatricopeptide repeat domain	0.0015	8	25.00	269	294
PPR	PPR repeat	1.2E-07	21	25.00	269	293
PPR_1	PPR repeat	5.9E-07	19	23.80	269	292
TPR_19	Tetratricopeptide repeat	0.019	5	25.00	279	324
PPR_2	PPR repeat family	2.3E-11	33	30.00	294	342
TPR_14	Tetratricopeptide repeat	0.026	5	23.50	297	333
PPR	PPR repeat	1.6E-08	24	25.00	298	327
RPN7	26S proteasome subunit RPN7	0.044	3	25.30	298	332
PPR_1	PPR repeat	0.055	3	23.80	299	323
PPR_3	Pentatricopeptide repeat domain	1.5E-06	18	25.00	299	341
DYW_deaminase	DYW family of nucleic acid deaminases	0.94	-1	31.60	305	326
PPR_long	Pentacotripeptide-repeat region of PRORP	1.4E-08	24	27.00	310	393
TPR_19	Tetratricopeptide repeat	0.3	1	25.00	318	354
PPR_1	PPR repeat	0.0029	7	23.80	326	358
PPR	PPR repeat	3.9E-06	16	25.00	333	360
TPR_14	Tetratricopeptide repeat	0.034	5	23.50	335	361
PPR_2	PPR repeat family	7E-05	12	30.00	337	377
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0018	7	27.00	348	425
PPR_3	Pentatricopeptide repeat domain	0.014	5	25.00	360	393
PPR_1	PPR repeat	2.6E-06	17	23.80	362	392
PPR_2	PPR repeat family	0.031	4	30.00	365	392
PPR	PPR repeat	3.2E-05	14	25.00	370	392
TPR_19	Tetratricopeptide repeat	0.023	5	25.00	373	395
TPR_14	Tetratricopeptide repeat	0.019	5	23.50	374	408
TPR_14	Tetratricopeptide repeat	0.23	2	23.50	400	430
PPR	PPR repeat	0.028	4	25.00	402	421
PPR_3	Pentatricopeptide repeat domain	0.17	1	25.00	405	425
PPR	PPR repeat	0.0053	7	25.00	436	462
DYW_deaminase	DYW family of nucleic acid deaminases	1.5E-38	121	31.60	468	593