c2pfam

AT2G03670.1 :

Domain Description Evalue Bits GA Start End
Rad17 Rad17 cell cycle checkpoint protein 0.0094 7 19.70 47 83
AAA_16 AAA ATPase domain 4.7E-07 22 32.60 56 86
Zeta_toxin Zeta toxin 0.0014 10 20.10 56 96
ATPase KaiC 0.086 4 26.60 56 73
TIP49 TIP49 C-terminus 0.00025 12 23.80 57 121
AAA_29 P-loop containing region of AAA domain 0.00077 11 27.00 57 91
IstB_IS21 IstB-like ATP binding protein 0.0057 8 24.10 58 79
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 8.3E-05 14 26.60 58 89
AAA_7 P-loop containing dynein motor region 4.4E-05 15 25.80 58 129
Sigma54_activat Sigma-54 interaction domain 0.035 5 20.20 58 81
AAA_3 ATPase family associated with various cellular activities (AAA) 0.022 6 21.10 59 83
Parvo_NS1 Parvovirus non-structural protein NS1 0.015 6 20.00 59 82
CPT Chloramphenicol phosphotransferase-like protein 0.06 5 21.00 59 82
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.11 4 20.50 59 78
MCM MCM2/3/5 family 0.032 5 25.20 59 130
DUF815 Protein of unknown function (DUF815) 2.6E-05 15 20.10 59 84
AAA_14 AAA domain 3.3E-05 15 27.00 59 130
AAA_22 AAA domain 0.00014 14 27.00 59 81
AAA_5 AAA domain (dynein-related subfamily) 4.3E-06 18 20.80 59 183
RuvB_N Holliday junction DNA helicase ruvB N-terminus 9.4E-06 17 20.00 59 96
AAA ATPase family associated with various cellular activities (AAA) 5.8E-38 122 20.80 59 193
AAA_24 AAA domain 1.2E-05 17 27.00 59 132
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0012 10 20.30 59 77
NACHT NACHT domain 0.0013 10 20.40 59 79
AAA_19 AAA domain 7.3E-05 15 25.10 59 109
ABC_tran ABC transporter 0.0028 10 23.10 59 94
Bac_DnaA Bacterial dnaA protein 0.01 7 20.40 59 83
ATPase_2 ATPase domain predominantly from Archaea 0.00058 11 33.20 60 82
NB-ARC NB-ARC domain 0.015 6 23.50 60 80
AAA_25 AAA domain 0.013 7 27.00 60 73
NTPase_1 NTPase 0.0027 9 23.90 60 81
RNA_helicase RNA helicase 0.00073 12 21.50 60 84
AAA_33 AAA domain 1.2E-06 20 27.00 60 105
AAA_2 AAA domain (Cdc48 subfamily) 3.6E-06 19 20.60 60 143
AAA_18 AAA domain 0.00028 13 29.40 60 91
AAA_11 AAA domain 3.6E-05 15 27.00 60 186
AAA_30 AAA domain 0.00012 13 27.00 60 128
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0021 9 20.70 60 81
Adeno_IVa2 Adenovirus IVa2 protein 0.014 6 20.10 60 78
AAA_28 AAA domain 0.0026 10 27.00 61 78
AAA_17 AAA domain 0.0029 10 27.00 62 85
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.00011 14 20.90 63 128
LpxK Tetraacyldisaccharide-1-P 4'-kinase 0.00029 12 20.00 66 123
AAA_25 AAA domain 0.58 1 27.00 81 143
AAA_16 AAA ATPase domain 0.027 6 32.60 97 153
AAA_22 AAA domain 0.017 7 27.00 98 135
DUF815 Protein of unknown function (DUF815) 0.61 1 20.10 172 217
AAA_lid_3 AAA+ lid domain 9.9E-15 46 27.20 217 262
Adeno_IVa2 Adenovirus IVa2 protein 0.16 2 20.10 309 339
Parvo_NS1 Parvovirus non-structural protein NS1 0.037 5 20.00 310 344
DUF815 Protein of unknown function (DUF815) 0.021 6 20.10 311 348
AAA_7 P-loop containing dynein motor region 0.0047 8 25.80 311 346
ABC_tran ABC transporter 0.028 7 23.10 313 342
ATPase KaiC 0.018 6 26.60 313 338
AAA_30 AAA domain 0.0049 8 27.00 314 347
RuvB_N Holliday junction DNA helicase ruvB N-terminus 3.7E-05 15 20.00 317 352
AAA_29 P-loop containing region of AAA domain 0.19 3 27.00 317 339
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.008 8 26.60 317 345
Rad17 Rad17 cell cycle checkpoint protein 0.00049 12 19.70 319 341
AAA_16 AAA ATPase domain 2.4E-06 20 32.60 319 356
TIP49 TIP49 C-terminus 4.8E-06 17 23.80 320 370
AAA_2 AAA domain (Cdc48 subfamily) 0.0035 9 20.60 320 413
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0027 9 20.30 320 340
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.023 6 20.50 320 342
Sigma54_activat Sigma-54 interaction domain 0.028 6 20.20 321 356
AAA_19 AAA domain 0.37 3 25.10 321 343
IstB_IS21 IstB-like ATP binding protein 0.0036 8 24.10 321 346
AAA_25 AAA domain 0.0072 7 27.00 322 341
Bac_DnaA Bacterial dnaA protein 0.16 3 20.40 323 348
NB-ARC NB-ARC domain 0.0033 8 23.50 323 343
ATPase_2 ATPase domain predominantly from Archaea 0.18 3 33.20 323 344
NACHT NACHT domain 0.018 7 20.40 323 345
AAA_28 AAA domain 0.011 8 27.00 323 369
NTPase_1 NTPase 0.012 7 23.90 323 346
AAA_24 AAA domain 0.11 4 27.00 323 342
RNA_helicase RNA helicase 0.003 10 21.50 323 346
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.00058 11 20.90 323 388
AAA_14 AAA domain 0.008 8 27.00 323 390
AAA_11 AAA domain 0.011 7 27.00 323 344
AAA_18 AAA domain 0.0024 10 29.40 323 465
AAA_22 AAA domain 0.0012 11 27.00 323 348
AAA_5 AAA domain (dynein-related subfamily) 6.3E-05 15 20.80 323 353
AAA_33 AAA domain 0.00038 12 27.00 323 352
AAA ATPase family associated with various cellular activities (AAA) 0 133 20.80 323 456
Zeta_toxin Zeta toxin 0.17 3 20.10 323 344
AAA_3 ATPase family associated with various cellular activities (AAA) 0.0086 8 21.10 323 349
CPT Chloramphenicol phosphotransferase-like protein 0.021 6 21.00 323 355
MCM MCM2/3/5 family 0.065 4 25.20 323 349
AAA_17 AAA domain 0.096 5 27.00 327 351
Bac_DnaA Bacterial dnaA protein 0.48 2 20.40 417 472
AAA_lid_3 AAA+ lid domain 8.4E-13 40 27.20 479 523
AAA_33 AAA domain 0.16 4 27.00 498 540

603

Rad17
AAA_16
Zeta_toxin
ATPase
TIP49
AAA_29
IstB_IS21
TsaE
AAA_7
Sigma54_activat
AAA_3
Parvo_NS1
CPT
PduV-EutP
MCM
DUF815
AAA_14
AAA_22
AAA_5
RuvB_N
AAA
AAA_24
Mg_chelatase
NACHT
AAA_19
ABC_tran
Bac_DnaA
ATPase_2
NB-ARC
AAA_25
NTPase_1
RNA_helicase
AAA_33
AAA_2
AAA_18
AAA_11
AAA_30
cobW
Adeno_IVa2
AAA_28
AAA_17
Viral_helicase1
LpxK
AAA_25
AAA_16
AAA_22
DUF815
AAA_lid_3
Adeno_IVa2
Parvo_NS1
DUF815
AAA_7
ABC_tran
ATPase
AAA_30
RuvB_N
AAA_29
TsaE
Rad17
AAA_16
TIP49
AAA_2
Mg_chelatase
PduV-EutP
Sigma54_activat
AAA_19
IstB_IS21
AAA_25
Bac_DnaA
NB-ARC
ATPase_2
NACHT
AAA_28
NTPase_1
AAA_24
RNA_helicase
Viral_helicase1
AAA_14
AAA_11
AAA_18
AAA_22
AAA_5
AAA_33
AAA
Zeta_toxin
AAA_3
CPT
MCM
AAA_17
Bac_DnaA
AAA_lid_3
AAA_33

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

CPT
11468347 Structural basis for chloramphenicol tolerance in Streptomyces venezuelae by chloramphenicol phosphotransferase activity. Protein Sci 2001;10:1508-1513.

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TsaE

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

Adeno_IVa2
10684284 Interaction of the adenovirus IVa2 protein with viral packaging sequences. J Virol 2000;74:2687-2693.
8207818 The product of the adenovirus intermediate gene IVa2 is a transcriptional activator of the major late promoter. J Virol 1994;68:4450-4457.

ATPase_2

ATPase

MCM
8332451 A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res 1993;21:2541-2547.

DUF815

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

LpxK
9575203 Accumulation of a lipid A precursor lacking the 4'-phosphate following inactivation of the Escherichia coli lpxK gene. J Biol Chem 1998;273:12457-12465.

AAA_30

AAA_29

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

AAA_24

AAA_22

AAA_19

AAA_18

AAA_17

AAA_16

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

Bac_DnaA

AAA_11

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

AAA_14

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

AAA_lid_3

NTPase_1

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

Parvo_NS1
8372437 Nuclear targeting of the parvoviral replicator molecule NS1: evidence for self-association prior to nuclear transport. Virology 1993;196:637-651.
9454701 Nonstructural protein-2 and the replication of canine parvovirus. Virology 1998;240:273-281.

Domain	Description	Evalue	Bits	GA	Start	End
Rad17	Rad17 cell cycle checkpoint protein	0.0094	7	19.70	47	83
AAA_16	AAA ATPase domain	4.7E-07	22	32.60	56	86
Zeta_toxin	Zeta toxin	0.0014	10	20.10	56	96
ATPase	KaiC	0.086	4	26.60	56	73
TIP49	TIP49 C-terminus	0.00025	12	23.80	57	121
AAA_29	P-loop containing region of AAA domain	0.00077	11	27.00	57	91
IstB_IS21	IstB-like ATP binding protein	0.0057	8	24.10	58	79
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	8.3E-05	14	26.60	58	89
AAA_7	P-loop containing dynein motor region	4.4E-05	15	25.80	58	129
Sigma54_activat	Sigma-54 interaction domain	0.035	5	20.20	58	81
AAA_3	ATPase family associated with various cellular activities (AAA)	0.022	6	21.10	59	83
Parvo_NS1	Parvovirus non-structural protein NS1	0.015	6	20.00	59	82
CPT	Chloramphenicol phosphotransferase-like protein	0.06	5	21.00	59	82
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.11	4	20.50	59	78
MCM	MCM2/3/5 family	0.032	5	25.20	59	130
DUF815	Protein of unknown function (DUF815)	2.6E-05	15	20.10	59	84
AAA_14	AAA domain	3.3E-05	15	27.00	59	130
AAA_22	AAA domain	0.00014	14	27.00	59	81
AAA_5	AAA domain (dynein-related subfamily)	4.3E-06	18	20.80	59	183
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	9.4E-06	17	20.00	59	96
AAA	ATPase family associated with various cellular activities (AAA)	5.8E-38	122	20.80	59	193
AAA_24	AAA domain	1.2E-05	17	27.00	59	132
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0012	10	20.30	59	77
NACHT	NACHT domain	0.0013	10	20.40	59	79
AAA_19	AAA domain	7.3E-05	15	25.10	59	109
ABC_tran	ABC transporter	0.0028	10	23.10	59	94
Bac_DnaA	Bacterial dnaA protein	0.01	7	20.40	59	83
ATPase_2	ATPase domain predominantly from Archaea	0.00058	11	33.20	60	82
NB-ARC	NB-ARC domain	0.015	6	23.50	60	80
AAA_25	AAA domain	0.013	7	27.00	60	73
NTPase_1	NTPase	0.0027	9	23.90	60	81
RNA_helicase	RNA helicase	0.00073	12	21.50	60	84
AAA_33	AAA domain	1.2E-06	20	27.00	60	105
AAA_2	AAA domain (Cdc48 subfamily)	3.6E-06	19	20.60	60	143
AAA_18	AAA domain	0.00028	13	29.40	60	91
AAA_11	AAA domain	3.6E-05	15	27.00	60	186
AAA_30	AAA domain	0.00012	13	27.00	60	128
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0021	9	20.70	60	81
Adeno_IVa2	Adenovirus IVa2 protein	0.014	6	20.10	60	78
AAA_28	AAA domain	0.0026	10	27.00	61	78
AAA_17	AAA domain	0.0029	10	27.00	62	85
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.00011	14	20.90	63	128
LpxK	Tetraacyldisaccharide-1-P 4'-kinase	0.00029	12	20.00	66	123
AAA_25	AAA domain	0.58	1	27.00	81	143
AAA_16	AAA ATPase domain	0.027	6	32.60	97	153
AAA_22	AAA domain	0.017	7	27.00	98	135
DUF815	Protein of unknown function (DUF815)	0.61	1	20.10	172	217
AAA_lid_3	AAA+ lid domain	9.9E-15	46	27.20	217	262
Adeno_IVa2	Adenovirus IVa2 protein	0.16	2	20.10	309	339
Parvo_NS1	Parvovirus non-structural protein NS1	0.037	5	20.00	310	344
DUF815	Protein of unknown function (DUF815)	0.021	6	20.10	311	348
AAA_7	P-loop containing dynein motor region	0.0047	8	25.80	311	346
ABC_tran	ABC transporter	0.028	7	23.10	313	342
ATPase	KaiC	0.018	6	26.60	313	338
AAA_30	AAA domain	0.0049	8	27.00	314	347
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	3.7E-05	15	20.00	317	352
AAA_29	P-loop containing region of AAA domain	0.19	3	27.00	317	339
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.008	8	26.60	317	345
Rad17	Rad17 cell cycle checkpoint protein	0.00049	12	19.70	319	341
AAA_16	AAA ATPase domain	2.4E-06	20	32.60	319	356
TIP49	TIP49 C-terminus	4.8E-06	17	23.80	320	370
AAA_2	AAA domain (Cdc48 subfamily)	0.0035	9	20.60	320	413
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0027	9	20.30	320	340
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.023	6	20.50	320	342
Sigma54_activat	Sigma-54 interaction domain	0.028	6	20.20	321	356
AAA_19	AAA domain	0.37	3	25.10	321	343
IstB_IS21	IstB-like ATP binding protein	0.0036	8	24.10	321	346
AAA_25	AAA domain	0.0072	7	27.00	322	341
Bac_DnaA	Bacterial dnaA protein	0.16	3	20.40	323	348
NB-ARC	NB-ARC domain	0.0033	8	23.50	323	343
ATPase_2	ATPase domain predominantly from Archaea	0.18	3	33.20	323	344
NACHT	NACHT domain	0.018	7	20.40	323	345
AAA_28	AAA domain	0.011	8	27.00	323	369
NTPase_1	NTPase	0.012	7	23.90	323	346
AAA_24	AAA domain	0.11	4	27.00	323	342
RNA_helicase	RNA helicase	0.003	10	21.50	323	346
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.00058	11	20.90	323	388
AAA_14	AAA domain	0.008	8	27.00	323	390
AAA_11	AAA domain	0.011	7	27.00	323	344
AAA_18	AAA domain	0.0024	10	29.40	323	465
AAA_22	AAA domain	0.0012	11	27.00	323	348
AAA_5	AAA domain (dynein-related subfamily)	6.3E-05	15	20.80	323	353
AAA_33	AAA domain	0.00038	12	27.00	323	352
AAA	ATPase family associated with various cellular activities (AAA)	0	133	20.80	323	456
Zeta_toxin	Zeta toxin	0.17	3	20.10	323	344
AAA_3	ATPase family associated with various cellular activities (AAA)	0.0086	8	21.10	323	349
CPT	Chloramphenicol phosphotransferase-like protein	0.021	6	21.00	323	355
MCM	MCM2/3/5 family	0.065	4	25.20	323	349
AAA_17	AAA domain	0.096	5	27.00	327	351
Bac_DnaA	Bacterial dnaA protein	0.48	2	20.40	417	472
AAA_lid_3	AAA+ lid domain	8.4E-13	40	27.20	479	523
AAA_33	AAA domain	0.16	4	27.00	498	540