AT2G03880.1 :

DomainDescriptionEvalueBitsGAStartEnd
ATP13Mitochondrial ATPase expression0.0066726.702572
PPR_2PPR repeat family 0.000161230.003571
PPR_longPentacotripeptide-repeat region of PRORP0.000221127.0037172
DUF3368Domain of unknown function (DUF3368)0.0038727.304369
PPR_3Pentatricopeptide repeat domain0.0052725.0050108
RNPP_CRNPP family C-terminal domain0.62026.5096122
PPR_1PPR repeat3.3E-051423.8097122
PPR_2PPR repeat family 1.3E-061930.0099127
PPRPPR repeat9.4E-071925.0099127
ClathrinRegion in Clathrin and VPS0.39123.6099148
TPR_19Tetratricopeptide repeat0.72125.00102125
PPR_longPentacotripeptide-repeat region of PRORP0.0068627.00116173
PPR_3Pentatricopeptide repeat domain9.4E-092625.00124173
PPR_1PPR repeat0.0058723.80125151
PPR_2PPR repeat family 3E-144330.00125172
RNPP_CRNPP family C-terminal domain0.055326.50125165
PPRPPR repeat3.9E-082425.00128158
Vps39_1Vacuolar sorting protein 39 domain 10.013621.40130155
PPR_longPentacotripeptide-repeat region of PRORP0.0034727.00146269
PPR_1PPR repeat0.0068723.80157169
PPR_3Pentatricopeptide repeat domain0.0032825.00188220
PPR_1PPR repeat6.4E-061623.80189221
PPR_2PPR repeat family 1.4E-051630.00193221
PPRPPR repeat5.1E-082325.00198221
TPR_14Tetratricopeptide repeat0.067523.50198220
TPR_19Tetratricopeptide repeat0.61125.00198219
TPR_16Tetratricopeptide repeat0.15332.70200220
PPR_2PPR repeat family 4.6E-103030.00224270
PPR_1PPR repeat1.8E-061823.80224252
PPR_3Pentatricopeptide repeat domain0.003825.00224255
PPRPPR repeat5.4E-102925.00227256
PPR_longPentacotripeptide-repeat region of PRORP0.0013827.00240324
DUF3368Domain of unknown function (DUF3368)0.56127.30244267
RNPP_CRNPP family C-terminal domain0.0031726.50277319
ClathrinRegion in Clathrin and VPS0.003823.60291350
TPR_19Tetratricopeptide repeat0.089425.00292322
PPR_3Pentatricopeptide repeat domain0.000671025.00293322
RPN726S proteasome subunit RPN70.000611025.30296324
DUF2095Uncharacterized protein conserved in archaea (DUF2095)0.0015925.00296327
Vps39_1Vacuolar sorting protein 39 domain 10.62121.40297322
PPR_1PPR repeat4.1E-092623.80297320
PPRPPR repeat1.3E-092825.00297324
PPR_2PPR repeat family 1.2E-082530.00297324
ATP13Mitochondrial ATPase expression0.093326.70298319
TPR_11TPR repeat0.024526.80301318
PPR_2PPR repeat family 8.9E-144230.00322368
PPR_1PPR repeat1.9E-103123.80322351
PPR_3Pentatricopeptide repeat domain1.1E-072225.00323361
PPRPPR repeat1.5E-123825.00325354
TPR_14Tetratricopeptide repeat0.14423.50327350
TPR_19Tetratricopeptide repeat0.84125.00335350
PPR_longPentacotripeptide-repeat region of PRORP6.4E-051327.00336422
PPRPPR repeat0.0083725.00366387
PPR_2PPR repeat family 0.16330.00368393
PPR_1PPR repeat9.6E-102823.80390422
PPRPPR repeat1.6E-082525.00397422
PPR_2PPR repeat family 5.1E-103030.00398437
PPR_3Pentatricopeptide repeat domain0.0031825.00398437
TPR_14Tetratricopeptide repeat0.012723.50403436
TPR_16Tetratricopeptide repeat0.01732.70403460
TPR_19Tetratricopeptide repeat0.064425.00408440
PPR_3Pentatricopeptide repeat domain0.008725.00421452
PPR_1PPR repeat0.0037723.80422434
TPR_14Tetratricopeptide repeat0.047523.50429468
TPR_19Tetratricopeptide repeat0.13325.00446480
TPR_17Tetratricopeptide repeat0.000221224.40450476
TPR_11TPR repeat0.0057726.80451473
PPR_2PPR repeat family 0.16330.00461493
PPRPPR repeat0.000631025.00463492
PPR_3Pentatricopeptide repeat domain0.011625.00463493
DYW_deaminaseDYW family of nucleic acid deaminases012431.60496620

 630

ATP13
PPR_2
PPR_long
DUF3368
PPR_3
RNPP_C
PPR_1
PPR_2
PPR
Clathrin
TPR_19
PPR_long
PPR_3
PPR_1
PPR_2
RNPP_C
PPR
Vps39_1
PPR_long
PPR_1
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_19
TPR_16
PPR_2
PPR_1
PPR_3
PPR
PPR_long
DUF3368
RNPP_C
Clathrin
TPR_19
PPR_3
RPN7
DUF2095
Vps39_1
PPR_1
PPR
PPR_2
ATP13
TPR_11
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_19
PPR_long
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_3
TPR_14
TPR_16
TPR_19
PPR_3
PPR_1
TPR_14
TPR_19
TPR_17
TPR_11
PPR_2
PPR
PPR_3
DYW_deaminase


References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_11

TPR_16

DYW_deaminase

ATP13

RNPP_C

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF3368

DUF2095