c2pfam

AT2G04240.1 :

Domain Description Evalue Bits GA Start End
DUF3446 Domain of unknown function (DUF3446) 3.9E-06 18 25.00 31 65
RNF220 E3 ubiquitin-protein ligase RNF220 0.00012 12 26.00 51 117
RINGv RING-variant domain 0.31 2 21.60 88 113
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.8E-08 24 21.40 93 148
zf-rbx1 RING-H2 zinc finger domain 2.9E-11 34 31.00 95 145
Prok-RING_4 Prokaryotic RING finger family 4 0.33 1 27.00 95 113
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.0002 12 20.70 97 144
Zf_RING KIAA1045 RING finger 7.6E-05 13 30.80 98 132
Prok-RING_1 Prokaryotic RING finger family 1 7.9E-05 13 29.10 99 132
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 1.3E-06 18 27.30 99 142
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.4E-10 30 27.00 100 148
FANCL_C FANCL C-terminal domain 4.1E-05 14 20.70 101 135
zf-RING_2 Ring finger domain 3E-15 47 27.30 101 145
zf-RING_11 RING-like zinc finger 5.3E-12 36 27.00 102 130
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 4.1E-10 30 27.00 102 144
zf-RING_5 zinc-RING finger domain 7.3E-09 26 27.90 102 146
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.9E-10 31 21.00 103 144
zf-RING_UBOX RING-type zinc-finger 4.2E-10 30 25.20 103 142
Prok-RING_4 Prokaryotic RING finger family 4 1E-05 16 27.00 103 146
RINGv RING-variant domain 0.00018 12 21.60 103 144
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.33 2 30.00 103 113
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.0019 9 30.00 103 144
zf-RING_4 RING/Ubox like zinc-binding domain 0.00026 11 27.00 103 147
Prok-RING_1 Prokaryotic RING finger family 1 0.066 4 29.10 138 147

162

DUF3446
RNF220
RINGv
zf-ANAPC11
zf-rbx1
Prok-RING_4
zf-Nse
Zf_RING
Prok-RING_1
Zn_ribbon_17
zf-C3HC4_3
FANCL_C
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_5
zf-C3HC4
zf-RING_UBOX
Prok-RING_4
RINGv
zf-C3HC4_4
zf-C3HC4_4
zf-RING_4
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

RINGv

zf-RING_11

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

RNF220

zf-ANAPC11

zf-RING_4

zf-C3HC4_2

zf-rbx1

zf-RING_5

Zn_ribbon_17

zf-RING_2

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

DUF3446

Zf_RING

zf-C3HC4_3

Prok-RING_4

zf-RING_UBOX

Prok-RING_1

zf-C3HC4_4

Domain	Description	Evalue	Bits	GA	Start	End
DUF3446	Domain of unknown function (DUF3446)	3.9E-06	18	25.00	31	65
RNF220	E3 ubiquitin-protein ligase RNF220	0.00012	12	26.00	51	117
RINGv	RING-variant domain	0.31	2	21.60	88	113
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.8E-08	24	21.40	93	148
zf-rbx1	RING-H2 zinc finger domain	2.9E-11	34	31.00	95	145
Prok-RING_4	Prokaryotic RING finger family 4	0.33	1	27.00	95	113
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.0002	12	20.70	97	144
Zf_RING	KIAA1045 RING finger	7.6E-05	13	30.80	98	132
Prok-RING_1	Prokaryotic RING finger family 1	7.9E-05	13	29.10	99	132
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	1.3E-06	18	27.30	99	142
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.4E-10	30	27.00	100	148
FANCL_C	FANCL C-terminal domain	4.1E-05	14	20.70	101	135
zf-RING_2	Ring finger domain	3E-15	47	27.30	101	145
zf-RING_11	RING-like zinc finger	5.3E-12	36	27.00	102	130
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	4.1E-10	30	27.00	102	144
zf-RING_5	zinc-RING finger domain	7.3E-09	26	27.90	102	146
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.9E-10	31	21.00	103	144
zf-RING_UBOX	RING-type zinc-finger	4.2E-10	30	25.20	103	142
Prok-RING_4	Prokaryotic RING finger family 4	1E-05	16	27.00	103	146
RINGv	RING-variant domain	0.00018	12	21.60	103	144
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.33	2	30.00	103	113
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.0019	9	30.00	103	144
zf-RING_4	RING/Ubox like zinc-binding domain	0.00026	11	27.00	103	147
Prok-RING_1	Prokaryotic RING finger family 1	0.066	4	29.10	138	147