c2pfam

AT1G08290.1 :

Domain Description Evalue Bits GA Start End
zf-C2H2_6 C2H2-type zinc finger 0.37 0 25.00 160 165
zf-H2C2_2 Zinc-finger double domain 0.00012 11 40.00 173 190
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 1.2E-05 14 22.60 179 199
zf-met Zinc-finger of C2H2 type 3.2E-05 13 21.20 180 199
zf-C2H2_4 C2H2-type zinc finger 1.9E-06 17 27.00 180 202
zf-C2H2_6 C2H2-type zinc finger 4.9E-08 22 25.00 180 199
zf-C2H2 Zinc finger, C2H2 type 4.4E-06 16 20.80 180 199
zf-C2H2 Zinc finger, C2H2 type 0.14 2 20.80 230 260
zf-C2H2_4 C2H2-type zinc finger 0.1 3 27.00 244 260
zf-H2C2_2 Zinc-finger double domain 1.8E-05 14 40.00 252 273
zf-C2H2 Zinc finger, C2H2 type 0.00081 9 20.80 265 284
zf-C2H2_4 C2H2-type zinc finger 0.002 8 27.00 265 286
zf-C2H2_6 C2H2-type zinc finger 0.91 -2 25.00 267 274
zf-C2H2 Zinc finger, C2H2 type 0.00065 9 20.80 294 311
zf-C2H2_4 C2H2-type zinc finger 0.02 5 27.00 294 311
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.0087 5 22.60 294 311
zf-met Zinc-finger of C2H2 type 0.095 2 21.20 295 311

337

zf-C2H2_6
zf-H2C2_2
zf-C2H2_jaz
zf-met
zf-C2H2_4
zf-C2H2_6
zf-C2H2
zf-C2H2
zf-C2H2_4
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_6
zf-C2H2
zf-C2H2_4
zf-C2H2_jaz
zf-met

References:

zf-C2H2_6

zf-H2C2_2

zf-C2H2_4

zf-met

zf-C2H2
9171100 Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997;25:2464-2469.
12683994 Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1. J Mol Biol 2003;328:9-32.

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
zf-C2H2_6	C2H2-type zinc finger	0.37	0	25.00	160	165
zf-H2C2_2	Zinc-finger double domain	0.00012	11	40.00	173	190
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	1.2E-05	14	22.60	179	199
zf-met	Zinc-finger of C2H2 type	3.2E-05	13	21.20	180	199
zf-C2H2_4	C2H2-type zinc finger	1.9E-06	17	27.00	180	202
zf-C2H2_6	C2H2-type zinc finger	4.9E-08	22	25.00	180	199
zf-C2H2	Zinc finger, C2H2 type	4.4E-06	16	20.80	180	199
zf-C2H2	Zinc finger, C2H2 type	0.14	2	20.80	230	260
zf-C2H2_4	C2H2-type zinc finger	0.1	3	27.00	244	260
zf-H2C2_2	Zinc-finger double domain	1.8E-05	14	40.00	252	273
zf-C2H2	Zinc finger, C2H2 type	0.00081	9	20.80	265	284
zf-C2H2_4	C2H2-type zinc finger	0.002	8	27.00	265	286
zf-C2H2_6	C2H2-type zinc finger	0.91	-2	25.00	267	274
zf-C2H2	Zinc finger, C2H2 type	0.00065	9	20.80	294	311
zf-C2H2_4	C2H2-type zinc finger	0.02	5	27.00	294	311
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.0087	5	22.60	294	311
zf-met	Zinc-finger of C2H2 type	0.095	2	21.20	295	311