c2pfam

AT2G04860.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.00056 9 30.00 34 57
PPR_3 Pentatricopeptide repeat domain 0.48 0 25.00 85 113
PPR_2 PPR repeat family 1.7E-05 14 30.00 89 114
PPR PPR repeat 1.8E-06 17 25.00 89 114
PPR_1 PPR repeat 0.013 4 23.80 90 111
BTAD Bacterial transcriptional activator domain 0.44 0 21.00 98 137
PPR_1 PPR repeat 2.2E-05 13 23.80 114 142
PPR_3 Pentatricopeptide repeat domain 0.0014 8 25.00 115 162
PPR_2 PPR repeat family 8.1E-11 31 30.00 115 155
PPR PPR repeat 4.6E-07 19 25.00 117 147
PPR_3 Pentatricopeptide repeat domain 0.034 3 25.00 179 227
RPN7 26S proteasome subunit RPN7 0.083 2 25.30 187 218
PPR_long Pentacotripeptide-repeat region of PRORP 0.015 4 27.00 188 262
PPR_1 PPR repeat 0.00091 8 23.80 190 213
PPR PPR repeat 2.8E-05 13 25.00 190 215
PPR_2 PPR repeat family 2.3E-05 14 30.00 190 216
PPR_2 PPR repeat family 8.7E-12 34 30.00 215 261
PPR_3 Pentatricopeptide repeat domain 0.0011 8 25.00 216 249
PPR_1 PPR repeat 3.6E-05 13 23.80 217 243
PPR PPR repeat 2.3E-09 26 25.00 218 248
BTAD Bacterial transcriptional activator domain 0.023 4 21.00 220 243
RPN7 26S proteasome subunit RPN7 0.57 -1 25.30 227 250
PPR_2 PPR repeat family 0.32 0 30.00 280 309
PPR PPR repeat 0.00037 10 25.00 284 306
PPR_1 PPR repeat 0.76 -1 23.80 285 303
BTAD Bacterial transcriptional activator domain 0.75 -1 21.00 285 309
PPR_3 Pentatricopeptide repeat domain 0.25 1 25.00 311 336
PPR_2 PPR repeat family 0.011 5 30.00 311 346
PPR PPR repeat 0.0026 7 25.00 316 337
PPR_1 PPR repeat 0.048 3 23.80 316 333
RPN7 26S proteasome subunit RPN7 0.0091 5 25.30 318 349
PPR_2 PPR repeat family 0.18 1 30.00 385 410
PPR PPR repeat 0.0015 8 25.00 386 410
PPR PPR repeat 2.8E-09 26 25.00 414 440
PPR_2 PPR repeat family 1.1E-10 31 30.00 414 459
PPR_1 PPR repeat 6E-06 15 23.80 414 439
PPR_3 Pentatricopeptide repeat domain 0.0026 7 25.00 414 440
BTAD Bacterial transcriptional activator domain 0.47 0 21.00 416 440
PPR_long Pentacotripeptide-repeat region of PRORP 0.0035 6 27.00 416 510
PPR_3 Pentatricopeptide repeat domain 0.0002 11 25.00 478 511
BTAD Bacterial transcriptional activator domain 0.24 1 21.00 482 511
PPR_2 PPR repeat family 0.009 5 30.00 485 511
PPR PPR repeat 8.2E-06 15 25.00 486 511
PPR_1 PPR repeat 0.061 2 23.80 488 508
RPN7 26S proteasome subunit RPN7 0.06 2 25.30 488 518
PPR_2 PPR repeat family 4.3E-13 38 30.00 513 560
PPR_1 PPR repeat 0.004 6 23.80 516 534
PPR_3 Pentatricopeptide repeat domain 1.4E-06 17 25.00 517 560
PPR PPR repeat 5.3E-09 25 25.00 517 546
BTAD Bacterial transcriptional activator domain 0.75 -1 21.00 517 543
PPR_long Pentacotripeptide-repeat region of PRORP 0.0014 7 27.00 532 590
PPR_1 PPR repeat 0.03 3 23.80 544 553
PPR PPR repeat 0.011 5 25.00 552 578
PPR_3 Pentatricopeptide repeat domain 0.029 4 25.00 577 597
PPR PPR repeat 0.21 1 25.00 589 612
PPR_3 Pentatricopeptide repeat domain 0.034 3 25.00 613 644
PPR PPR repeat 0.39 0 25.00 620 639
PPR PPR repeat 0.025 4 25.00 655 682
PPR_2 PPR repeat family 0.047 3 30.00 661 682

692

PPR_2
PPR_3
PPR_2
PPR
PPR_1
BTAD
PPR_1
PPR_3
PPR_2
PPR
PPR_3
RPN7
PPR_long
PPR_1
PPR
PPR_2
PPR_2
PPR_3
PPR_1
PPR
BTAD
RPN7
PPR_2
PPR
PPR_1
BTAD
PPR_3
PPR_2
PPR
PPR_1
RPN7
PPR_2
PPR
PPR
PPR_2
PPR_1
PPR_3
BTAD
PPR_long
PPR_3
BTAD
PPR_2
PPR
PPR_1
RPN7
PPR_2
PPR_1
PPR_3
PPR
BTAD
PPR_long
PPR_1
PPR
PPR_3
PPR
PPR_3
PPR
PPR
PPR_2

References:

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

PPR_long

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.00056	9	30.00	34	57
PPR_3	Pentatricopeptide repeat domain	0.48	0	25.00	85	113
PPR_2	PPR repeat family	1.7E-05	14	30.00	89	114
PPR	PPR repeat	1.8E-06	17	25.00	89	114
PPR_1	PPR repeat	0.013	4	23.80	90	111
BTAD	Bacterial transcriptional activator domain	0.44	0	21.00	98	137
PPR_1	PPR repeat	2.2E-05	13	23.80	114	142
PPR_3	Pentatricopeptide repeat domain	0.0014	8	25.00	115	162
PPR_2	PPR repeat family	8.1E-11	31	30.00	115	155
PPR	PPR repeat	4.6E-07	19	25.00	117	147
PPR_3	Pentatricopeptide repeat domain	0.034	3	25.00	179	227
RPN7	26S proteasome subunit RPN7	0.083	2	25.30	187	218
PPR_long	Pentacotripeptide-repeat region of PRORP	0.015	4	27.00	188	262
PPR_1	PPR repeat	0.00091	8	23.80	190	213
PPR	PPR repeat	2.8E-05	13	25.00	190	215
PPR_2	PPR repeat family	2.3E-05	14	30.00	190	216
PPR_2	PPR repeat family	8.7E-12	34	30.00	215	261
PPR_3	Pentatricopeptide repeat domain	0.0011	8	25.00	216	249
PPR_1	PPR repeat	3.6E-05	13	23.80	217	243
PPR	PPR repeat	2.3E-09	26	25.00	218	248
BTAD	Bacterial transcriptional activator domain	0.023	4	21.00	220	243
RPN7	26S proteasome subunit RPN7	0.57	-1	25.30	227	250
PPR_2	PPR repeat family	0.32	0	30.00	280	309
PPR	PPR repeat	0.00037	10	25.00	284	306
PPR_1	PPR repeat	0.76	-1	23.80	285	303
BTAD	Bacterial transcriptional activator domain	0.75	-1	21.00	285	309
PPR_3	Pentatricopeptide repeat domain	0.25	1	25.00	311	336
PPR_2	PPR repeat family	0.011	5	30.00	311	346
PPR	PPR repeat	0.0026	7	25.00	316	337
PPR_1	PPR repeat	0.048	3	23.80	316	333
RPN7	26S proteasome subunit RPN7	0.0091	5	25.30	318	349
PPR_2	PPR repeat family	0.18	1	30.00	385	410
PPR	PPR repeat	0.0015	8	25.00	386	410
PPR	PPR repeat	2.8E-09	26	25.00	414	440
PPR_2	PPR repeat family	1.1E-10	31	30.00	414	459
PPR_1	PPR repeat	6E-06	15	23.80	414	439
PPR_3	Pentatricopeptide repeat domain	0.0026	7	25.00	414	440
BTAD	Bacterial transcriptional activator domain	0.47	0	21.00	416	440
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0035	6	27.00	416	510
PPR_3	Pentatricopeptide repeat domain	0.0002	11	25.00	478	511
BTAD	Bacterial transcriptional activator domain	0.24	1	21.00	482	511
PPR_2	PPR repeat family	0.009	5	30.00	485	511
PPR	PPR repeat	8.2E-06	15	25.00	486	511
PPR_1	PPR repeat	0.061	2	23.80	488	508
RPN7	26S proteasome subunit RPN7	0.06	2	25.30	488	518
PPR_2	PPR repeat family	4.3E-13	38	30.00	513	560
PPR_1	PPR repeat	0.004	6	23.80	516	534
PPR_3	Pentatricopeptide repeat domain	1.4E-06	17	25.00	517	560
PPR	PPR repeat	5.3E-09	25	25.00	517	546
BTAD	Bacterial transcriptional activator domain	0.75	-1	21.00	517	543
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0014	7	27.00	532	590
PPR_1	PPR repeat	0.03	3	23.80	544	553
PPR	PPR repeat	0.011	5	25.00	552	578
PPR_3	Pentatricopeptide repeat domain	0.029	4	25.00	577	597
PPR	PPR repeat	0.21	1	25.00	589	612
PPR_3	Pentatricopeptide repeat domain	0.034	3	25.00	613	644
PPR	PPR repeat	0.39	0	25.00	620	639
PPR	PPR repeat	0.025	4	25.00	655	682
PPR_2	PPR repeat family	0.047	3	30.00	661	682