c2pfam

AT2G06530.1 :

Domain Description Evalue Bits GA Start End
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.00093 9 30.00 16 48
MRP-L28 Mitochondrial ribosomal protein L28 0.0022 8 24.10 17 109
Spc24 Spc24 subunit of Ndc80 0.00064 10 22.00 18 65
Snf7 Snf7 0 157 20.80 18 187
PspA_IM30 PspA/IM30 family 0.0069 6 30.00 18 54
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.017 5 30.00 19 98
YlqD YlqD protein 4.3E-05 14 27.00 20 87
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.0024 8 27.90 21 85
DUF2203 Uncharacterized conserved protein (DUF2203) 0.06 4 20.80 23 87
HTH_6 Helix-turn-helix domain, rpiR family 6.9E-05 13 20.60 28 78
Expansin_C Expansin C-terminal domain 0.00012 12 24.50 44 97
Cas9_Topo Topo homolgy domain in CRISPR-associated endonuclease Cas9 0.00012 12 25.00 53 102
PspA_IM30 PspA/IM30 family 4.8E-05 13 30.00 78 162
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.058 3 27.90 99 153
YlqD YlqD protein 0.48 0 27.00 106 150
Spc24 Spc24 subunit of Ndc80 0.074 3 22.00 119 182
DUF2203 Uncharacterized conserved protein (DUF2203) 0.0044 7 20.80 119 172
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.78 -1 30.00 128 135
Cas9_Topo Topo homolgy domain in CRISPR-associated endonuclease Cas9 0.47 0 25.00 184 204

225

TPR_MLP1_2
MRP-L28
Spc24
Snf7
PspA_IM30
TPR_MLP1_2
YlqD
Seryl_tRNA_N
DUF2203
HTH_6
Expansin_C
Cas9_Topo
PspA_IM30
Seryl_tRNA_N
YlqD
Spc24
DUF2203
TPR_MLP1_2
Cas9_Topo

References:

Snf7
12194857 Escrt-III: an endosome-associated heterooligomeric protein complex required for mvb sorting. Dev Cell 2002;3:271-282.
15469844 ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes. Dev Cell 2004;7:559-569.
14583093 Structure and function of human Vps20 and Snf7 proteins. Biochem J 2004;377:693-700.

YlqD

Expansin_C

PspA_IM30
10629175 The PspA protein of Escherichia coli is a negative regulator of sigma(54)-dependent transcription. J Bacteriol 2000;182:311-319.
12079332 Mechanism of Action of the Escherichia coli Phage Shock Protein PspA in Repression of the AAA Family Transcription Factor PspF. J Mol Biol 2002;320:23-37.

MRP-L28
12125055 Genomic differences between Candida glabrata and Saccharomyces cerevisiae around the MRPL28 and GCN3 loci. Yeast. 2002;19:991-994.
2060626 Extended N-terminal sequencing of proteins of the large ribosomal subunit from yeast mitochondria. FEBS Lett. 1991;284:51-56.

Spc24
11266451 The Ndc80p complex from Saccharomyces cerevisiae contains conserved centromere components and has a function in chromosome segregation. J Cell Biol 2001;152:349-360.

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

Cas9_Topo

DUF2203

Seryl_tRNA_N
8654381 The crystal structure of the ternary complex of T.thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site. EMBO J 1996;15:2834-2842.

HTH_6
8576032 Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression. J Bacteriol 1996;178:1003-1011.

Domain	Description	Evalue	Bits	GA	Start	End
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.00093	9	30.00	16	48
MRP-L28	Mitochondrial ribosomal protein L28	0.0022	8	24.10	17	109
Spc24	Spc24 subunit of Ndc80	0.00064	10	22.00	18	65
Snf7	Snf7	0	157	20.80	18	187
PspA_IM30	PspA/IM30 family	0.0069	6	30.00	18	54
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.017	5	30.00	19	98
YlqD	YlqD protein	4.3E-05	14	27.00	20	87
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.0024	8	27.90	21	85
DUF2203	Uncharacterized conserved protein (DUF2203)	0.06	4	20.80	23	87
HTH_6	Helix-turn-helix domain, rpiR family	6.9E-05	13	20.60	28	78
Expansin_C	Expansin C-terminal domain	0.00012	12	24.50	44	97
Cas9_Topo	Topo homolgy domain in CRISPR-associated endonuclease Cas9	0.00012	12	25.00	53	102
PspA_IM30	PspA/IM30 family	4.8E-05	13	30.00	78	162
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.058	3	27.90	99	153
YlqD	YlqD protein	0.48	0	27.00	106	150
Spc24	Spc24 subunit of Ndc80	0.074	3	22.00	119	182
DUF2203	Uncharacterized conserved protein (DUF2203)	0.0044	7	20.80	119	172
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.78	-1	30.00	128	135
Cas9_Topo	Topo homolgy domain in CRISPR-associated endonuclease Cas9	0.47	0	25.00	184	204