c2pfam

AT1G08540.1 :

Domain Description Evalue Bits GA Start End
TMEM215 TMEM215 family 0.78 -2 27.00 88 132
TMEM215 TMEM215 family 8.2E-05 11 27.00 193 283
Sigma70_r1_2 Sigma-70 factor, region 1.2 6.2E-06 16 20.20 258 290
Sigma70_r3 Sigma-70 region 3 0.0027 7 25.30 288 324
HTH_AsnC-type AsnC-type helix-turn-helix domain 0.76 -1 27.00 308 327
Sigma70_r2 Sigma-70 region 2 1.2E-21 66 20.20 336 405
Sigma70_r3 Sigma-70 region 3 2E-21 65 25.30 415 490
Phage_terminase Phage terminase small subunit 0.024 4 21.60 424 447
GerE Bacterial regulatory proteins, luxR family 0.11 2 20.60 436 449
HTH_AsnC-type AsnC-type helix-turn-helix domain 0.03 4 27.00 437 448
HTH_3 Helix-turn-helix 0.9 -1 20.50 438 447
Sigma70_r4 Sigma-70, region 4 8.6E-23 69 22.70 504 556
GerE Bacterial regulatory proteins, luxR family 0.00025 10 20.60 507 560
Phage_terminase Phage terminase small subunit 0.0062 6 21.60 522 548
HTH_AsnC-type AsnC-type helix-turn-helix domain 0.002 7 27.00 523 545
Sigma70_r3 Sigma-70 region 3 0.0034 7 25.30 525 547
HTH_3 Helix-turn-helix 0.00027 10 20.50 527 549

572

TMEM215
TMEM215
Sigma70_r1_2
Sigma70_r3
HTH_AsnC-type
Sigma70_r2
Sigma70_r3
Phage_terminase
GerE
HTH_AsnC-type
HTH_3
Sigma70_r4
GerE
Phage_terminase
HTH_AsnC-type
Sigma70_r3
HTH_3

References:

TMEM215

Sigma70_r4
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.

Sigma70_r3
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.

Sigma70_r2
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.
8858155 Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell 1996;87:127-136.

Sigma70_r1_2
8858155 Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell 1996;87:127-136.

GerE

HTH_AsnC-type

Phage_terminase
3294420 Cloning, overexpression and purification of the terminase proteins gp16 and gp17 of bacteriophage T4. Construction of a defined in-vitro DNA packaging system using purified terminase proteins. J Mol Biol. 1988;200:475-488.

HTH_3

Domain	Description	Evalue	Bits	GA	Start	End
TMEM215	TMEM215 family	0.78	-2	27.00	88	132
TMEM215	TMEM215 family	8.2E-05	11	27.00	193	283
Sigma70_r1_2	Sigma-70 factor, region 1.2	6.2E-06	16	20.20	258	290
Sigma70_r3	Sigma-70 region 3	0.0027	7	25.30	288	324
HTH_AsnC-type	AsnC-type helix-turn-helix domain	0.76	-1	27.00	308	327
Sigma70_r2	Sigma-70 region 2	1.2E-21	66	20.20	336	405
Sigma70_r3	Sigma-70 region 3	2E-21	65	25.30	415	490
Phage_terminase	Phage terminase small subunit	0.024	4	21.60	424	447
GerE	Bacterial regulatory proteins, luxR family	0.11	2	20.60	436	449
HTH_AsnC-type	AsnC-type helix-turn-helix domain	0.03	4	27.00	437	448
HTH_3	Helix-turn-helix	0.9	-1	20.50	438	447
Sigma70_r4	Sigma-70, region 4	8.6E-23	69	22.70	504	556
GerE	Bacterial regulatory proteins, luxR family	0.00025	10	20.60	507	560
Phage_terminase	Phage terminase small subunit	0.0062	6	21.60	522	548
HTH_AsnC-type	AsnC-type helix-turn-helix domain	0.002	7	27.00	523	545
Sigma70_r3	Sigma-70 region 3	0.0034	7	25.30	525	547
HTH_3	Helix-turn-helix	0.00027	10	20.50	527	549