c2pfam

AT1G08560.1 :

Domain Description Evalue Bits GA Start End
T2SSF Type II secretion system (T2SS), protein F 0.068 3 25.20 18 77
Synaptobrevin Synaptobrevin 0.063 3 25.00 30 59
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.49 0 30.00 32 69
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 0.098 3 27.90 35 71
DUF3150 Protein of unknown function (DUF3150) 0.0041 6 22.80 42 123
SesA N-terminal domain on NACHT_NTPase and P-loop NTPases 0.0003 11 26.20 44 149
Syntaxin Syntaxin 0 205 25.00 45 247
Prefoldin_2 Prefoldin subunit 0.71 0 21.10 49 67
Syntaxin_2 Syntaxin-like protein 4.1E-05 14 30.50 69 164
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain 3.5E-05 14 27.90 71 123
DUF5089 Domain of unknown function (DUF5089) 0.72 -1 36.10 82 117
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.22 1 30.00 86 117
Prefoldin_2 Prefoldin subunit 0.0004 10 21.10 93 131
Lge1 Transcriptional regulatory protein LGE1 0.0027 8 22.80 101 123
Prefoldin_2 Prefoldin subunit 0.43 1 21.10 137 158
DUF3150 Protein of unknown function (DUF3150) 0.00062 9 22.80 137 168
Synaptobrevin Synaptobrevin 0.3 1 25.00 141 167
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.00068 9 30.00 182 258
DUF5089 Domain of unknown function (DUF5089) 0.95 -1 36.10 184 205
T2SSF Type II secretion system (T2SS), protein F 0.00012 12 25.20 196 300
SesA N-terminal domain on NACHT_NTPase and P-loop NTPases 0.47 1 26.20 209 235
Prefoldin_2 Prefoldin subunit 0.8 0 21.10 212 240
DUF5089 Domain of unknown function (DUF5089) 9.3E-06 15 36.10 213 268
Lge1 Transcriptional regulatory protein LGE1 0.67 0 22.80 214 234
DUF3675 Protein of unknown function (DUF3675) 0.00021 12 21.10 234 303
Synaptobrevin Synaptobrevin 2E-05 14 25.00 244 303
SNARE SNARE domain 1.4E-21 66 30.00 248 300

310

T2SSF
Synaptobrevin
MCPsignal
Seryl_tRNA_N
DUF3150
SesA
Syntaxin
Prefoldin_2
Syntaxin_2
Seryl_tRNA_N
DUF5089
MCPsignal
Prefoldin_2
Lge1
Prefoldin_2
DUF3150
Synaptobrevin
MCPsignal
DUF5089
T2SSF
SesA
Prefoldin_2
DUF5089
Lge1
DUF3675
Synaptobrevin
SNARE

References:

Prefoldin_2
1748305 Primary structure of the embryo-expressed gene KE2 from the mouse H-2K region. Gene 1991;107:345-346.
7828874 YKE2, a yeast nuclear gene encoding a protein showing homology to mouse KE2 and containing a putative leucine-zipper motif. Gene 1994;151:197-201.
9463374 A novel protein complex promoting formation of functional alpha- and gamma-tubulin. EMBO J 1998;17:952-966.

DUF3675

SesA

T2SSF

Syntaxin
11839791 Characterization of temperature-sensitive mutations in the yeast syntaxin 1 homologues Sso1p and Sso2p, and evidence of a distinct function for Sso1p in sporulation. J Cell Sci 2002;115:409-420.
11157748 t-SNARE dephosphorylation promotes SNARE assembly and exocytosis in yeast. EMBO J 2001;20:411-421.
11224573 Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:258-264.
11224554 The taming of the SNARE. Nat Struct Biol 2001;8:186-188.
12072456 Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae. Genetics 2002;161:585-594.
11737951 The syntaxins. Genome Biol 2001;2:REVIEWS3012.

Synaptobrevin

SNARE
9096343 A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci U S A 1997;94:3046-3051.

DUF5089

Syntaxin_2

Lge1
18374642 Histone ubiquitination: triggering gene activity. Mol Cell. 2008;29:653-663.

DUF3150

Seryl_tRNA_N
8654381 The crystal structure of the ternary complex of T.thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site. EMBO J 1996;15:2834-2842.

MCPsignal
1601874 Sequence and characterization of Bacillus subtilis CheW. J Biol Chem 1992;267:12055-12060.

Domain	Description	Evalue	Bits	GA	Start	End
T2SSF	Type II secretion system (T2SS), protein F	0.068	3	25.20	18	77
Synaptobrevin	Synaptobrevin	0.063	3	25.00	30	59
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.49	0	30.00	32	69
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	0.098	3	27.90	35	71
DUF3150	Protein of unknown function (DUF3150)	0.0041	6	22.80	42	123
SesA	N-terminal domain on NACHT_NTPase and P-loop NTPases	0.0003	11	26.20	44	149
Syntaxin	Syntaxin	0	205	25.00	45	247
Prefoldin_2	Prefoldin subunit	0.71	0	21.10	49	67
Syntaxin_2	Syntaxin-like protein	4.1E-05	14	30.50	69	164
Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	3.5E-05	14	27.90	71	123
DUF5089	Domain of unknown function (DUF5089)	0.72	-1	36.10	82	117
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.22	1	30.00	86	117
Prefoldin_2	Prefoldin subunit	0.0004	10	21.10	93	131
Lge1	Transcriptional regulatory protein LGE1	0.0027	8	22.80	101	123
Prefoldin_2	Prefoldin subunit	0.43	1	21.10	137	158
DUF3150	Protein of unknown function (DUF3150)	0.00062	9	22.80	137	168
Synaptobrevin	Synaptobrevin	0.3	1	25.00	141	167
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.00068	9	30.00	182	258
DUF5089	Domain of unknown function (DUF5089)	0.95	-1	36.10	184	205
T2SSF	Type II secretion system (T2SS), protein F	0.00012	12	25.20	196	300
SesA	N-terminal domain on NACHT_NTPase and P-loop NTPases	0.47	1	26.20	209	235
Prefoldin_2	Prefoldin subunit	0.8	0	21.10	212	240
DUF5089	Domain of unknown function (DUF5089)	9.3E-06	15	36.10	213	268
Lge1	Transcriptional regulatory protein LGE1	0.67	0	22.80	214	234
DUF3675	Protein of unknown function (DUF3675)	0.00021	12	21.10	234	303
Synaptobrevin	Synaptobrevin	2E-05	14	25.00	244	303
SNARE	SNARE domain	1.4E-21	66	30.00	248	300