c2pfam

AT2G13610.1 :

Domain Description Evalue Bits GA Start End
Rad17 Rad17 cell cycle checkpoint protein 5.3E-07 20 19.70 57 158
ABC_tran ABC transporter 2.9E-31 99 23.10 63 211
AAA_29 P-loop containing region of AAA domain 1.8E-06 18 27.00 66 107
AAA_16 AAA ATPase domain 7.9E-07 20 32.60 67 115
ATPase_2 ATPase domain predominantly from Archaea 0.00032 11 33.20 68 108
RsgA_GTPase RsgA GTPase 3.6E-06 18 30.00 72 104
AAA_PrkA PrkA AAA domain 0.00014 11 19.70 74 111
AAA_14 AAA domain 0.00051 11 27.00 74 116
AAA_22 AAA domain 6.4E-05 14 27.00 75 97
AAA_23 AAA domain 6.8E-05 14 27.00 75 97
SMC_N RecF/RecN/SMC N terminal domain 0.0032 7 40.00 75 91
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 9.9E-06 16 27.00 76 108
Dynamin_N Dynamin family 5.7E-05 14 21.00 76 111
Cytidylate_kin Cytidylate kinase 9.5E-05 13 20.40 77 105
RNA_helicase RNA helicase 0.00017 13 21.50 77 109
AAA_28 AAA domain 0.00026 12 27.00 77 102
AAA_18 AAA domain 0.00075 11 29.40 77 97
AAA_5 AAA domain (dynein-related subfamily) 0.00025 12 20.80 78 107
Thymidylate_kin Thymidylate kinase 1.9E-05 15 21.10 80 144
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00037 11 27.00 201 244
SMC_N RecF/RecN/SMC N terminal domain 0.022 5 40.00 203 255
ABC2_membrane_7 ABC-2 type transporter 1.1E-07 22 22.70 241 635
ABC_tran ABC transporter 0.93 1 23.10 331 360
ABC2_membrane ABC-2 type transporter 0 152 25.50 373 581
PDR_CDR CDR ABC transporter 4.2E-05 14 20.50 607 636

649

Rad17
ABC_tran
AAA_29
AAA_16
ATPase_2
RsgA_GTPase
AAA_PrkA
AAA_14
AAA_22
AAA_23
SMC_N
AAA_21
Dynamin_N
Cytidylate_kin
RNA_helicase
AAA_28
AAA_18
AAA_5
Thymidylate_kin
AAA_21
SMC_N
ABC2_membrane_7
ABC_tran
ABC2_membrane
PDR_CDR

References:

AAA_16

PDR_CDR
12709320 Functional Similarities and Differences between Candida albicans Cdr1p and Cdr2p Transporters. Antimicrob Agents Chemother 2003;47:1543-1554.

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

Thymidylate_kin

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

ATPase_2

ABC2_membrane_7

AAA_PrkA
8626065 Cloning and characterization of the Bacillus subtilis prkA gene encoding a novel serine protein kinase. Gene 1996;168:55-60.

AAA_29

AAA_28

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

RsgA_GTPase

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
Rad17	Rad17 cell cycle checkpoint protein	5.3E-07	20	19.70	57	158
ABC_tran	ABC transporter	2.9E-31	99	23.10	63	211
AAA_29	P-loop containing region of AAA domain	1.8E-06	18	27.00	66	107
AAA_16	AAA ATPase domain	7.9E-07	20	32.60	67	115
ATPase_2	ATPase domain predominantly from Archaea	0.00032	11	33.20	68	108
RsgA_GTPase	RsgA GTPase	3.6E-06	18	30.00	72	104
AAA_PrkA	PrkA AAA domain	0.00014	11	19.70	74	111
AAA_14	AAA domain	0.00051	11	27.00	74	116
AAA_22	AAA domain	6.4E-05	14	27.00	75	97
AAA_23	AAA domain	6.8E-05	14	27.00	75	97
SMC_N	RecF/RecN/SMC N terminal domain	0.0032	7	40.00	75	91
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	9.9E-06	16	27.00	76	108
Dynamin_N	Dynamin family	5.7E-05	14	21.00	76	111
Cytidylate_kin	Cytidylate kinase	9.5E-05	13	20.40	77	105
RNA_helicase	RNA helicase	0.00017	13	21.50	77	109
AAA_28	AAA domain	0.00026	12	27.00	77	102
AAA_18	AAA domain	0.00075	11	29.40	77	97
AAA_5	AAA domain (dynein-related subfamily)	0.00025	12	20.80	78	107
Thymidylate_kin	Thymidylate kinase	1.9E-05	15	21.10	80	144
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00037	11	27.00	201	244
SMC_N	RecF/RecN/SMC N terminal domain	0.022	5	40.00	203	255
ABC2_membrane_7	ABC-2 type transporter	1.1E-07	22	22.70	241	635
ABC_tran	ABC transporter	0.93	1	23.10	331	360
ABC2_membrane	ABC-2 type transporter	0	152	25.50	373	581
PDR_CDR	CDR ABC transporter	4.2E-05	14	20.50	607	636