c2pfam

AT2G17210.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.85 -2 27.00 14 61
PPR PPR repeat 0.26 1 25.00 23 42
PPR_2 PPR repeat family 0.033 4 30.00 24 59
PPR_1 PPR repeat 1 -2 23.80 111 123
PPR_2 PPR repeat family 3.4E-06 17 30.00 112 158
PPR PPR repeat 0.0018 8 25.00 114 144
PPR_2 PPR repeat family 0.0057 6 30.00 189 210
PPR PPR repeat 0.022 5 25.00 198 210
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.0035 5 19.90 198 246
PPR_1 PPR repeat 0.091 2 23.80 199 207
PPR_2 PPR repeat family 2.3E-09 27 30.00 209 257
PPR_1 PPR repeat 0.4 0 23.80 210 237
PPR_3 Pentatricopeptide repeat domain 0.021 4 25.00 210 257
PPR PPR repeat 1.7E-06 17 25.00 212 238
PPR_long Pentacotripeptide-repeat region of PRORP 0.012 4 27.00 229 266
PPR_1 PPR repeat 0.76 -1 23.80 244 255
PPR PPR repeat 0.66 0 25.00 248 272
PPR_2 PPR repeat family 9.6E-07 18 30.00 282 312
PPR_1 PPR repeat 0.00016 11 23.80 282 308
PPR_3 Pentatricopeptide repeat domain 0.042 3 25.00 282 308
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.2 -1 25.90 282 311
PPR PPR repeat 1E-05 15 25.00 285 308
PPR_long Pentacotripeptide-repeat region of PRORP 9.1E-06 14 27.00 287 359
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.00049 8 19.90 288 351
PPR_1 PPR repeat 7.9E-05 12 23.80 312 341
PPR_2 PPR repeat family 1.8E-13 40 30.00 312 359
PPR_3 Pentatricopeptide repeat domain 0.00094 9 25.00 313 346
PPR PPR repeat 9.7E-09 24 25.00 315 342
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0003 9 25.90 318 365
TPR_14 Tetratricopeptide repeat 0.078 3 23.50 324 349
PPR_1 PPR repeat 0.00014 11 23.80 378 411
PPR_long Pentacotripeptide-repeat region of PRORP 0.48 -1 27.00 382 416
PPR_2 PPR repeat family 0.061 3 30.00 383 410
PPR PPR repeat 0.00028 10 25.00 386 413
PPR_2 PPR repeat family 5.3E-10 29 30.00 413 457
PPR_3 Pentatricopeptide repeat domain 0.00075 9 25.00 414 457
PPR_1 PPR repeat 2.3E-06 17 23.80 414 442
PPR PPR repeat 6.7E-09 25 25.00 416 442
PPR PPR repeat 5.5E-05 13 25.00 487 514
PPR_2 PPR repeat family 0.0016 8 30.00 487 514
PPR_1 PPR repeat 0.19 1 23.80 487 508
PPR_3 Pentatricopeptide repeat domain 0.21 1 25.00 487 514
PPR_3 Pentatricopeptide repeat domain 2.1E-10 30 25.00 511 559
PPR_2 PPR repeat family 6E-15 45 30.00 512 559
PPR_1 PPR repeat 3.5E-07 19 23.80 513 541
PPR PPR repeat 3.1E-12 35 25.00 515 544
TPR_14 Tetratricopeptide repeat 0.0085 6 23.50 518 554
PPR_long Pentacotripeptide-repeat region of PRORP 3.4E-07 19 27.00 532 610
PPR_1 PPR repeat 0.024 4 23.80 543 552
PPR PPR repeat 3.4E-05 13 25.00 550 578
PPR_2 PPR repeat family 0.0031 7 30.00 558 595
PPR_3 Pentatricopeptide repeat domain 0.012 5 25.00 565 594
PPR_1 PPR repeat 8.7E-06 15 23.80 580 607
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.45 -2 25.90 584 612
PPR_2 PPR repeat family 0.088 2 30.00 587 608
PPR PPR repeat 0.00073 9 25.00 587 610
TPR_14 Tetratricopeptide repeat 0.11 3 23.50 589 609

736

PPR_long
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_2
PPR
ChAPs
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_2
PPR_1
PPR_3
MRP-S27
PPR
PPR_long
ChAPs
PPR_1
PPR_2
PPR_3
PPR
MRP-S27
TPR_14
PPR_1
PPR_long
PPR_2
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR_3
PPR_3
PPR_2
PPR_1
PPR
TPR_14
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
MRP-S27
PPR_2
PPR
TPR_14

References:

ChAPs
16498409 Arf1p, Chs5p and the ChAPs are required for export of specialized cargo from the Golgi. EMBO J. 2006;25:943-954.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.85	-2	27.00	14	61
PPR	PPR repeat	0.26	1	25.00	23	42
PPR_2	PPR repeat family	0.033	4	30.00	24	59
PPR_1	PPR repeat	1	-2	23.80	111	123
PPR_2	PPR repeat family	3.4E-06	17	30.00	112	158
PPR	PPR repeat	0.0018	8	25.00	114	144
PPR_2	PPR repeat family	0.0057	6	30.00	189	210
PPR	PPR repeat	0.022	5	25.00	198	210
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.0035	5	19.90	198	246
PPR_1	PPR repeat	0.091	2	23.80	199	207
PPR_2	PPR repeat family	2.3E-09	27	30.00	209	257
PPR_1	PPR repeat	0.4	0	23.80	210	237
PPR_3	Pentatricopeptide repeat domain	0.021	4	25.00	210	257
PPR	PPR repeat	1.7E-06	17	25.00	212	238
PPR_long	Pentacotripeptide-repeat region of PRORP	0.012	4	27.00	229	266
PPR_1	PPR repeat	0.76	-1	23.80	244	255
PPR	PPR repeat	0.66	0	25.00	248	272
PPR_2	PPR repeat family	9.6E-07	18	30.00	282	312
PPR_1	PPR repeat	0.00016	11	23.80	282	308
PPR_3	Pentatricopeptide repeat domain	0.042	3	25.00	282	308
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.2	-1	25.90	282	311
PPR	PPR repeat	1E-05	15	25.00	285	308
PPR_long	Pentacotripeptide-repeat region of PRORP	9.1E-06	14	27.00	287	359
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.00049	8	19.90	288	351
PPR_1	PPR repeat	7.9E-05	12	23.80	312	341
PPR_2	PPR repeat family	1.8E-13	40	30.00	312	359
PPR_3	Pentatricopeptide repeat domain	0.00094	9	25.00	313	346
PPR	PPR repeat	9.7E-09	24	25.00	315	342
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0003	9	25.90	318	365
TPR_14	Tetratricopeptide repeat	0.078	3	23.50	324	349
PPR_1	PPR repeat	0.00014	11	23.80	378	411
PPR_long	Pentacotripeptide-repeat region of PRORP	0.48	-1	27.00	382	416
PPR_2	PPR repeat family	0.061	3	30.00	383	410
PPR	PPR repeat	0.00028	10	25.00	386	413
PPR_2	PPR repeat family	5.3E-10	29	30.00	413	457
PPR_3	Pentatricopeptide repeat domain	0.00075	9	25.00	414	457
PPR_1	PPR repeat	2.3E-06	17	23.80	414	442
PPR	PPR repeat	6.7E-09	25	25.00	416	442
PPR	PPR repeat	5.5E-05	13	25.00	487	514
PPR_2	PPR repeat family	0.0016	8	30.00	487	514
PPR_1	PPR repeat	0.19	1	23.80	487	508
PPR_3	Pentatricopeptide repeat domain	0.21	1	25.00	487	514
PPR_3	Pentatricopeptide repeat domain	2.1E-10	30	25.00	511	559
PPR_2	PPR repeat family	6E-15	45	30.00	512	559
PPR_1	PPR repeat	3.5E-07	19	23.80	513	541
PPR	PPR repeat	3.1E-12	35	25.00	515	544
TPR_14	Tetratricopeptide repeat	0.0085	6	23.50	518	554
PPR_long	Pentacotripeptide-repeat region of PRORP	3.4E-07	19	27.00	532	610
PPR_1	PPR repeat	0.024	4	23.80	543	552
PPR	PPR repeat	3.4E-05	13	25.00	550	578
PPR_2	PPR repeat family	0.0031	7	30.00	558	595
PPR_3	Pentatricopeptide repeat domain	0.012	5	25.00	565	594
PPR_1	PPR repeat	8.7E-06	15	23.80	580	607
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.45	-2	25.90	584	612
PPR_2	PPR repeat family	0.088	2	30.00	587	608
PPR	PPR repeat	0.00073	9	25.00	587	610
TPR_14	Tetratricopeptide repeat	0.11	3	23.50	589	609