c2pfam

AT2G17670.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0096 6 30.00 89 134
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-08 24 27.00 124 236
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.088 3 29.50 139 159
Mtf2 Mtf2 family 0.0045 6 27.00 139 166
PPR_2 PPR repeat family 1.5E-05 15 30.00 142 170
PPR_3 Pentatricopeptide repeat domain 2.5E-05 14 25.00 146 203
PPR_1 PPR repeat 2.1E-07 20 23.80 153 184
PPR_2 PPR repeat family 1.6E-12 37 30.00 157 206
PPR PPR repeat 7.2E-05 13 25.00 166 188
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0084 6 28.10 166 187
Clathrin Region in Clathrin and VPS 0.0029 7 23.60 166 227
TPR_19 Tetratricopeptide repeat 0.002 8 25.00 167 189
TPR_16 Tetratricopeptide repeat 0.14 3 32.70 168 201
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.33 1 29.50 181 196
PPR_1 PPR repeat 1.5E-08 24 23.80 191 221
PPR_2 PPR repeat family 1.1E-13 41 30.00 192 242
PPR PPR repeat 3.9E-05 14 25.00 195 222
Mtf2 Mtf2 family 0.026 4 27.00 195 235
PPR_long Pentacotripeptide-repeat region of PRORP 8.8E-08 21 27.00 213 317
PPR_3 Pentatricopeptide repeat domain 1.3E-09 28 25.00 217 274
PPR_1 PPR repeat 8E-08 22 23.80 225 255
PPR_2 PPR repeat family 3.5E-06 17 30.00 228 265
PPR PPR repeat 0.00078 10 25.00 231 260
PPR_3 Pentatricopeptide repeat domain 2.8E-11 33 25.00 253 307
PPR_1 PPR repeat 3.4E-08 23 23.80 260 292
PPR_2 PPR repeat family 6.9E-18 54 30.00 263 312
PPR PPR repeat 8.1E-09 25 25.00 267 296
PPR_long Pentacotripeptide-repeat region of PRORP 8.1E-23 71 27.00 282 443
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.0054 6 29.50 287 300
PPR_1 PPR repeat 8.3E-13 38 23.80 295 326
PPR_2 PPR repeat family 3E-17 52 30.00 298 347
Clathrin Region in Clathrin and VPS 0.0041 7 23.60 300 350
PPR PPR repeat 8E-10 28 25.00 301 330
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0089 6 28.10 306 328
TPR_19 Tetratricopeptide repeat 0.089 3 25.00 310 342
PPR_3 Pentatricopeptide repeat domain 5.2E-13 39 25.00 324 378
PPR_1 PPR repeat 3.6E-12 36 23.80 330 362
PPR_2 PPR repeat family 2.1E-20 63 30.00 333 382
PPR PPR repeat 1.6E-10 31 25.00 337 366
Mtf2 Mtf2 family 0.068 3 27.00 355 376
PPR_1 PPR repeat 1.1E-13 41 23.80 364 397
PPR_2 PPR repeat family 1.2E-11 35 30.00 370 417
PPR PPR repeat 1.5E-11 34 25.00 372 401
PPR_3 Pentatricopeptide repeat domain 0.00011 12 25.00 393 430
SBD_N Sugar-binding N-terminal domain 0.00017 11 25.00 400 458
PPR_2 PPR repeat family 1.4E-05 15 30.00 407 446
PPR_1 PPR repeat 1.1E-05 15 23.80 408 430
PPR PPR repeat 0.00015 12 25.00 408 429
TPR_19 Tetratricopeptide repeat 0.096 3 25.00 410 439
TPR_16 Tetratricopeptide repeat 0.0099 6 32.70 411 440

463

PPR_2
PPR_long
Exog_C
Mtf2
PPR_2
PPR_3
PPR_1
PPR_2
PPR
SPOB_a
Clathrin
TPR_19
TPR_16
Exog_C
PPR_1
PPR_2
PPR
Mtf2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
Exog_C
PPR_1
PPR_2
Clathrin
PPR
SPOB_a
TPR_19
PPR_3
PPR_1
PPR_2
PPR
Mtf2
PPR_1
PPR_2
PPR
PPR_3
SBD_N
PPR_2
PPR_1
PPR
TPR_19
TPR_16

References:

Exog_C

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

SBD_N

TPR_16

Mtf2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0096	6	30.00	89	134
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-08	24	27.00	124	236
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.088	3	29.50	139	159
Mtf2	Mtf2 family	0.0045	6	27.00	139	166
PPR_2	PPR repeat family	1.5E-05	15	30.00	142	170
PPR_3	Pentatricopeptide repeat domain	2.5E-05	14	25.00	146	203
PPR_1	PPR repeat	2.1E-07	20	23.80	153	184
PPR_2	PPR repeat family	1.6E-12	37	30.00	157	206
PPR	PPR repeat	7.2E-05	13	25.00	166	188
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0084	6	28.10	166	187
Clathrin	Region in Clathrin and VPS	0.0029	7	23.60	166	227
TPR_19	Tetratricopeptide repeat	0.002	8	25.00	167	189
TPR_16	Tetratricopeptide repeat	0.14	3	32.70	168	201
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.33	1	29.50	181	196
PPR_1	PPR repeat	1.5E-08	24	23.80	191	221
PPR_2	PPR repeat family	1.1E-13	41	30.00	192	242
PPR	PPR repeat	3.9E-05	14	25.00	195	222
Mtf2	Mtf2 family	0.026	4	27.00	195	235
PPR_long	Pentacotripeptide-repeat region of PRORP	8.8E-08	21	27.00	213	317
PPR_3	Pentatricopeptide repeat domain	1.3E-09	28	25.00	217	274
PPR_1	PPR repeat	8E-08	22	23.80	225	255
PPR_2	PPR repeat family	3.5E-06	17	30.00	228	265
PPR	PPR repeat	0.00078	10	25.00	231	260
PPR_3	Pentatricopeptide repeat domain	2.8E-11	33	25.00	253	307
PPR_1	PPR repeat	3.4E-08	23	23.80	260	292
PPR_2	PPR repeat family	6.9E-18	54	30.00	263	312
PPR	PPR repeat	8.1E-09	25	25.00	267	296
PPR_long	Pentacotripeptide-repeat region of PRORP	8.1E-23	71	27.00	282	443
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.0054	6	29.50	287	300
PPR_1	PPR repeat	8.3E-13	38	23.80	295	326
PPR_2	PPR repeat family	3E-17	52	30.00	298	347
Clathrin	Region in Clathrin and VPS	0.0041	7	23.60	300	350
PPR	PPR repeat	8E-10	28	25.00	301	330
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0089	6	28.10	306	328
TPR_19	Tetratricopeptide repeat	0.089	3	25.00	310	342
PPR_3	Pentatricopeptide repeat domain	5.2E-13	39	25.00	324	378
PPR_1	PPR repeat	3.6E-12	36	23.80	330	362
PPR_2	PPR repeat family	2.1E-20	63	30.00	333	382
PPR	PPR repeat	1.6E-10	31	25.00	337	366
Mtf2	Mtf2 family	0.068	3	27.00	355	376
PPR_1	PPR repeat	1.1E-13	41	23.80	364	397
PPR_2	PPR repeat family	1.2E-11	35	30.00	370	417
PPR	PPR repeat	1.5E-11	34	25.00	372	401
PPR_3	Pentatricopeptide repeat domain	0.00011	12	25.00	393	430
SBD_N	Sugar-binding N-terminal domain	0.00017	11	25.00	400	458
PPR_2	PPR repeat family	1.4E-05	15	30.00	407	446
PPR_1	PPR repeat	1.1E-05	15	23.80	408	430
PPR	PPR repeat	0.00015	12	25.00	408	429
TPR_19	Tetratricopeptide repeat	0.096	3	25.00	410	439
TPR_16	Tetratricopeptide repeat	0.0099	6	32.70	411	440