c2pfam

AT2G17870.1 :

Domain Description Evalue Bits GA Start End
CSD 'Cold-shock' DNA-binding domain 8.6E-26 79 20.80 13 76
OB_RNB Ribonuclease B OB domain 3.1E-06 16 20.20 22 42
zf-CCHC_3 Zinc knuckle 0.015 4 27.00 94 110
zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.0019 7 27.00 94 109
zf-CCHC Zinc knuckle 1.1E-10 30 20.80 95 110
zf-CCHC_4 Zinc knuckle 3.4E-05 13 27.00 96 110
zf-CCHC_2 Zinc knuckle 0.052 3 27.00 96 109
zf-CCHC_3 Zinc knuckle 0.0085 5 27.00 128 148
zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.00039 9 27.00 129 146
zf-CCHC Zinc knuckle 5.6E-09 25 20.80 131 147
zf-CCHC_4 Zinc knuckle 0.00042 9 27.00 132 146
zf-CCHC_2 Zinc knuckle 0.00053 9 27.00 132 147
zf-CCHC_3 Zinc knuckle 0.0053 6 27.00 161 183
zf-CCHC Zinc knuckle 3.6E-10 29 20.80 161 177
zf-CCHC_4 Zinc knuckle 3.5E-05 13 27.00 162 177
zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.011 5 27.00 163 177
zf-CCHC_2 Zinc knuckle 0.031 3 27.00 166 177
zf-CCHC Zinc knuckle 5.3E-09 25 20.80 197 213
zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.0025 7 27.00 198 212
zf-CCHC_4 Zinc knuckle 0.00044 9 27.00 198 212
zf-CCHC_2 Zinc knuckle 0.0024 7 27.00 198 213
zf-CCHC_3 Zinc knuckle 0.0076 5 27.00 198 214
zf-CCHC_3 Zinc knuckle 0.022 4 27.00 222 236
zf-CCHC_4 Zinc knuckle 0.00017 10 27.00 224 240
zf-CCHC Zinc knuckle 8.6E-09 24 20.80 225 241
zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.0082 5 27.00 226 243
zf-CCHC_3 Zinc knuckle 0.00066 9 27.00 250 268
zf-CCHC_4 Zinc knuckle 0.00031 10 27.00 251 268
zf-CCHC Zinc knuckle 1.1E-09 27 20.80 252 268
zf-CCHC_5 GAG-polyprotein viral zinc-finger 0.0063 5 27.00 254 268
zf-CCHC_2 Zinc knuckle 0.047 3 27.00 257 267
zf-CCHC_5 GAG-polyprotein viral zinc-finger 5.6E-06 15 27.00 281 299
zf-CCHC Zinc knuckle 1.1E-10 30 20.80 282 299
zf-CCHC_3 Zinc knuckle 0.0012 8 27.00 282 298
zf-CCHC_2 Zinc knuckle 2.3E-06 16 27.00 283 297
zf-CCHC_4 Zinc knuckle 0.0015 7 27.00 284 298

301

CSD
OB_RNB
zf-CCHC_3
zf-CCHC_5
zf-CCHC
zf-CCHC_4
zf-CCHC_2
zf-CCHC_3
zf-CCHC_5
zf-CCHC
zf-CCHC_4
zf-CCHC_2
zf-CCHC_3
zf-CCHC
zf-CCHC_4
zf-CCHC_5
zf-CCHC_2
zf-CCHC
zf-CCHC_5
zf-CCHC_4
zf-CCHC_2
zf-CCHC_3
zf-CCHC_3
zf-CCHC_4
zf-CCHC
zf-CCHC_5
zf-CCHC_3
zf-CCHC_4
zf-CCHC
zf-CCHC_5
zf-CCHC_2
zf-CCHC_5
zf-CCHC
zf-CCHC_3
zf-CCHC_2
zf-CCHC_4

References:

zf-CCHC

zf-CCHC_5

zf-CCHC_4

zf-CCHC_3

zf-CCHC_2

CSD
8197194 Crystal structure of CspA, the major cold shock protein of Escherichia coli. Proc Natl Acad Sci U S A 1994;91:5119-5123.

OB_RNB

Domain	Description	Evalue	Bits	GA	Start	End
CSD	'Cold-shock' DNA-binding domain	8.6E-26	79	20.80	13	76
OB_RNB	Ribonuclease B OB domain	3.1E-06	16	20.20	22	42
zf-CCHC_3	Zinc knuckle	0.015	4	27.00	94	110
zf-CCHC_5	GAG-polyprotein viral zinc-finger	0.0019	7	27.00	94	109
zf-CCHC	Zinc knuckle	1.1E-10	30	20.80	95	110
zf-CCHC_4	Zinc knuckle	3.4E-05	13	27.00	96	110
zf-CCHC_2	Zinc knuckle	0.052	3	27.00	96	109
zf-CCHC_3	Zinc knuckle	0.0085	5	27.00	128	148
zf-CCHC_5	GAG-polyprotein viral zinc-finger	0.00039	9	27.00	129	146
zf-CCHC	Zinc knuckle	5.6E-09	25	20.80	131	147
zf-CCHC_4	Zinc knuckle	0.00042	9	27.00	132	146
zf-CCHC_2	Zinc knuckle	0.00053	9	27.00	132	147
zf-CCHC_3	Zinc knuckle	0.0053	6	27.00	161	183
zf-CCHC	Zinc knuckle	3.6E-10	29	20.80	161	177
zf-CCHC_4	Zinc knuckle	3.5E-05	13	27.00	162	177
zf-CCHC_5	GAG-polyprotein viral zinc-finger	0.011	5	27.00	163	177
zf-CCHC_2	Zinc knuckle	0.031	3	27.00	166	177
zf-CCHC	Zinc knuckle	5.3E-09	25	20.80	197	213
zf-CCHC_5	GAG-polyprotein viral zinc-finger	0.0025	7	27.00	198	212
zf-CCHC_4	Zinc knuckle	0.00044	9	27.00	198	212
zf-CCHC_2	Zinc knuckle	0.0024	7	27.00	198	213
zf-CCHC_3	Zinc knuckle	0.0076	5	27.00	198	214
zf-CCHC_3	Zinc knuckle	0.022	4	27.00	222	236
zf-CCHC_4	Zinc knuckle	0.00017	10	27.00	224	240
zf-CCHC	Zinc knuckle	8.6E-09	24	20.80	225	241
zf-CCHC_5	GAG-polyprotein viral zinc-finger	0.0082	5	27.00	226	243
zf-CCHC_3	Zinc knuckle	0.00066	9	27.00	250	268
zf-CCHC_4	Zinc knuckle	0.00031	10	27.00	251	268
zf-CCHC	Zinc knuckle	1.1E-09	27	20.80	252	268
zf-CCHC_5	GAG-polyprotein viral zinc-finger	0.0063	5	27.00	254	268
zf-CCHC_2	Zinc knuckle	0.047	3	27.00	257	267
zf-CCHC_5	GAG-polyprotein viral zinc-finger	5.6E-06	15	27.00	281	299
zf-CCHC	Zinc knuckle	1.1E-10	30	20.80	282	299
zf-CCHC_3	Zinc knuckle	0.0012	8	27.00	282	298
zf-CCHC_2	Zinc knuckle	2.3E-06	16	27.00	283	297
zf-CCHC_4	Zinc knuckle	0.0015	7	27.00	284	298