c2pfam

AT2G18790.1 :

Domain Description Evalue Bits GA Start End
PAS_2 PAS fold 0 146 21.40 103 219
PAS PAS fold 0.68 0 22.60 120 146
PAS_9 PAS domain 0.0089 6 27.00 120 183
sCache_3_2 Single cache domain 3 0.00011 12 28.40 234 335
GAF GAF domain 1.4E-35 113 20.90 252 433
PHY Phytochrome region 0 181 20.30 446 621
PAS PAS fold 5.1E-26 81 22.60 655 770
PAS_8 PAS domain 0.00013 12 21.80 659 699
PAS_4 PAS fold 2.9E-08 24 23.10 663 774
PAS_9 PAS domain 9.3E-06 16 27.00 667 771
PAS_3 PAS fold 0.00023 11 20.70 679 732
PAS PAS fold 1.4E-26 82 22.60 786 905
PAS_4 PAS fold 0.032 4 23.10 800 841
PAS_8 PAS domain 0.0087 6 21.80 801 833
PAS_9 PAS domain 0.0013 9 27.00 804 902
PAS_3 PAS fold 0.057 3 20.70 812 831
GAF GAF domain 0.8 0 20.90 883 910
HisKA His Kinase A (phosphoacceptor) domain 4.5E-13 39 22.40 930 991
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1.7E-12 38 21.30 1039 1140

1172

PAS_2
PAS
PAS_9
sCache_3_2
GAF
PHY
PAS
PAS_8
PAS_4
PAS_9
PAS_3
PAS
PAS_4
PAS_8
PAS_9
PAS_3
GAF
HisKA
HATPase_c

References:

PAS_4
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

HisKA
9989504 Structure of CheA, a signal-transducing histidine kinase. Cell 1999;96:131-141.

PAS_9

PAS_8

PAS_2
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

GAF
9433123 The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends Biochem Sci 1997;22:458-459.

PAS
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

PAS_3
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

PHY

HATPase_c

sCache_3_2

Domain	Description	Evalue	Bits	GA	Start	End
PAS_2	PAS fold	0	146	21.40	103	219
PAS	PAS fold	0.68	0	22.60	120	146
PAS_9	PAS domain	0.0089	6	27.00	120	183
sCache_3_2	Single cache domain 3	0.00011	12	28.40	234	335
GAF	GAF domain	1.4E-35	113	20.90	252	433
PHY	Phytochrome region	0	181	20.30	446	621
PAS	PAS fold	5.1E-26	81	22.60	655	770
PAS_8	PAS domain	0.00013	12	21.80	659	699
PAS_4	PAS fold	2.9E-08	24	23.10	663	774
PAS_9	PAS domain	9.3E-06	16	27.00	667	771
PAS_3	PAS fold	0.00023	11	20.70	679	732
PAS	PAS fold	1.4E-26	82	22.60	786	905
PAS_4	PAS fold	0.032	4	23.10	800	841
PAS_8	PAS domain	0.0087	6	21.80	801	833
PAS_9	PAS domain	0.0013	9	27.00	804	902
PAS_3	PAS fold	0.057	3	20.70	812	831
GAF	GAF domain	0.8	0	20.90	883	910
HisKA	His Kinase A (phosphoacceptor) domain	4.5E-13	39	22.40	930	991
HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	1.7E-12	38	21.30	1039	1140