AT2G18940.1 :

DomainDescriptionEvalueBitsGAStartEnd
TPR_10Tetratricopeptide repeat0.24227.50169189
MRP-S27Mitochondrial 28S ribosomal protein S270.4025.90178259
PPR_longPentacotripeptide-repeat region of PRORP3.9E-072027.00183275
TPR_19Tetratricopeptide repeat0.0031925.00188242
ClathrinRegion in Clathrin and VPS0.6123.60189233
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.0013921.90192264
PPR_3Pentatricopeptide repeat domain9.1E-185525.00197258
BTADBacterial transcriptional activator domain0.018621.00197238
TPR_12Tetratricopeptide repeat0.000191330.10205235
Vps39_1Vacuolar sorting protein 39 domain 10.61121.40205238
PPR_1PPR repeat2.4E-072123.80208237
PPR_2PPR repeat family 4.4E-154730.00209255
TPR_14Tetratricopeptide repeat0.000391223.50211243
ATP13Mitochondrial ATPase expression0.085426.70211236
TPR_8Tetratricopeptide repeat1.7E-051625.70211235
RPN726S proteasome subunit RPN70.075425.30212238
PPRPPR repeat6.7E-113325.00212240
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.3228.10217236
TPR_1Tetratricopeptide repeat0.000251220.40218237
Mtf2Mtf2 family3.8E-051427.00218287
TPR_2Tetratricopeptide repeat0.000691122.40219237
TPR_7Tetratricopeptide repeat1.3E-051627.90219242
TPR_10Tetratricopeptide repeat0.036527.50219235
PPR_1PPR repeat0.000261223.80239260
PPR_2PPR repeat family 6.2E-123730.00243293
PPRPPR repeat0.000111325.00246277
PPR_longPentacotripeptide-repeat region of PRORP1.4E-092827.00266403
PPR_3Pentatricopeptide repeat domain3.5E-144425.00268328
PPR_1PPR repeat4.7E-051423.80275306
PPRPPR repeat8.7E-082325.00282311
PPR_2PPR repeat family 7.2E-051430.00283314
TPR_12Tetratricopeptide repeat0.36230.10297341
PPR_1PPR repeat6.6E-082323.80311343
PPR_2PPR repeat family 3.9E-134030.00314355
PMBRPseudomurein-binding repeat0.94124.90315334
PPRPPR repeat2.3E-092825.00317347
ClathrinRegion in Clathrin and VPS0.033523.60318365
Vps39_1Vacuolar sorting protein 39 domain 10.61121.40318349
TPR_19Tetratricopeptide repeat0.3325.00329373
BTADBacterial transcriptional activator domain0.84121.00330373
DUF2095Uncharacterized protein conserved in archaea (DUF2095)0.27225.00333383
Mtf2Mtf2 family0.44127.00336355
PPR_3Pentatricopeptide repeat domain1.2E-123925.00337398
PPR_1PPR repeat0.00031123.80346377
PPR_2PPR repeat family 9.1E-144230.00350397
PMBRPseudomurein-binding repeat0.43224.90350364
ClathrinRegion in Clathrin and VPS0.045423.60351401
PPRPPR repeat5.1E-072125.00352382
MRP-S27Mitochondrial 28S ribosomal protein S270.27125.90358410
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.0039721.90372401
PMBRPseudomurein-binding repeat0.16324.90373389
PPR_1PPR repeat6.1E-123623.80380413
PPR_3Pentatricopeptide repeat domain7.7E-154625.00385433
PPR_2PPR repeat family 9.7E-144230.00387428
PPRPPR repeat2.4E-123725.00387417
Vps39_1Vacuolar sorting protein 39 domain 10.47221.40388414
DUF2095Uncharacterized protein conserved in archaea (DUF2095)0.22225.00390430
Vps39_1Vacuolar sorting protein 39 domain 10.049521.40391443
TPR_1Tetratricopeptide repeat0.3220.40395409
PPR_longPentacotripeptide-repeat region of PRORP3.5E-113427.00404541
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.64021.90407437
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.61126.10407438
PPR_1PPR repeat1.6E-051523.80416448
PPR_2PPR repeat family 1.6E-154830.00419466
Mtf2Mtf2 family0.000871027.00420460
PPRPPR repeat6.3E-072025.00423452
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.27121.90440471
PPR_3Pentatricopeptide repeat domain5.4E-134025.00443502
PPR_1PPR repeat0.0029823.80450463
PPR_2PPR repeat family 5.7E-123730.00454501
PPRPPR repeat9E-072025.00458487
Mtf2Mtf2 family0.013627.00475506
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.86-121.90478503
PPR_1PPR repeat4E-082423.80486518
PPRPPR repeat1.9E-082525.00493522
PPR_2PPR repeat family 4.1E-051530.00493522
BTADBacterial transcriptional activator domain0.39221.00494518
PPR_longPentacotripeptide-repeat region of PRORP5.9E-082327.00510605
PPR_3Pentatricopeptide repeat domain4.1E-113425.00515572
PPR_2PPR repeat family 6.6E-144330.00525573
PPR_1PPR repeat0.000241223.80526553
PPRPPR repeat2.3E-082525.00528557
PPR_1PPR repeat0.11323.80555576
PPRPPR repeat0.005825.00563587
PPR_3Pentatricopeptide repeat domain0.049525.00564595
PPR_longPentacotripeptide-repeat region of PRORP2.3E-072127.00611714
PPR_3Pentatricopeptide repeat domain6.4E-134025.00623678
PPR_1PPR repeat1.5E-051623.80626655
PPR_2PPR repeat family 5.5E-123730.00629677
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.14221.90630676
PPRPPR repeat1.9E-061925.00632662
ClathrinRegion in Clathrin and VPS0.000211223.60637694
TPR_19Tetratricopeptide repeat0.019625.00645696
MRP-S27Mitochondrial 28S ribosomal protein S270.027425.90653688
PPR_1PPR repeat8.6E-082323.80660690
PPR_2PPR repeat family 5.3E-144330.00664713
TPR_12Tetratricopeptide repeat0.24330.10666690
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.0044826.10666720
PPRPPR repeat1.8E-072225.00667695
RPN726S proteasome subunit RPN70.82025.30669693
Vps39_1Vacuolar sorting protein 39 domain 10.52221.40669695
PPR_3Pentatricopeptide repeat domain1.9E-051625.00678711
DUF2095Uncharacterized protein conserved in archaea (DUF2095)0.069425.00688731
ATP13Mitochondrial ATPase expression0.032526.70690728
PPR_1PPR repeat4.2E-154623.80697728
PPR_2PPR repeat family 2.5E-134130.00699734
PPRPPR repeat6.5E-123625.00702732
RPN726S proteasome subunit RPN70.69025.30709729
PPR_longPentacotripeptide-repeat region of PRORP0.000511027.00717801
PPR_3Pentatricopeptide repeat domain3.2E-092825.00723777
PPR_1PPR repeat0.000981023.80730750
PPR_2PPR repeat family 4.1E-123730.00734783
PPRPPR repeat8.7E-061725.00737767
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.039528.10743764
ATP13Mitochondrial ATPase expression0.032526.70764797
PPR_1PPR repeat5.6E-103023.80766796
MRP-S27Mitochondrial 28S ribosomal protein S270.025425.90769814
PPRPPR repeat4.6E-061825.00773798
PPR_2PPR repeat family 0.0028930.00777797
FluMu_NMu-like prophage FluMu N-terminal domain0.000781025.80777812
RPN726S proteasome subunit RPN70.23225.30779803
TPR_2Tetratricopeptide repeat0.87122.40781794
TPR_1Tetratricopeptide repeat0.99020.40781796
ClathrinRegion in Clathrin and VPS1023.60781802

 822

TPR_10
MRP-S27
PPR_long
TPR_19
Clathrin
ECSIT
PPR_3
BTAD
TPR_12
Vps39_1
PPR_1
PPR_2
TPR_14
ATP13
TPR_8
RPN7
PPR
SPOB_a
TPR_1
Mtf2
TPR_2
TPR_7
TPR_10
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
TPR_12
PPR_1
PPR_2
PMBR
PPR
Clathrin
Vps39_1
TPR_19
BTAD
DUF2095
Mtf2
PPR_3
PPR_1
PPR_2
PMBR
Clathrin
PPR
MRP-S27
ECSIT
PMBR
PPR_1
PPR_3
PPR_2
PPR
Vps39_1
DUF2095
Vps39_1
TPR_1
PPR_long
ECSIT
RPM2
PPR_1
PPR_2
Mtf2
PPR
ECSIT
PPR_3
PPR_1
PPR_2
PPR
Mtf2
ECSIT
PPR_1
PPR
PPR_2
BTAD
PPR_long
PPR_3
PPR_2
PPR_1
PPR
PPR_1
PPR
PPR_3
PPR_long
PPR_3
PPR_1
PPR_2
ECSIT
PPR
Clathrin
TPR_19
MRP-S27
PPR_1
PPR_2
TPR_12
RPM2
PPR
RPN7
Vps39_1
PPR_3
DUF2095
ATP13
PPR_1
PPR_2
PPR
RPN7
PPR_long
PPR_3
PPR_1
PPR_2
PPR
SPOB_a
ATP13
PPR_1
MRP-S27
PPR
PPR_2
FluMu_N
RPN7
TPR_2
TPR_1
Clathrin


References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

TPR_19

FluMu_N

TPR_14

TPR_12

TPR_10

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

SPOB_a

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

DUF2095

ATP13

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

PPR_long

PPR_3

PPR_2

PPR_1

PMBR

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

Mtf2

TPR_8

TPR_7