c2pfam

AT1G62914.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.013 6 25.00 44 90
PPR_1 PPR repeat 0.35 1 23.80 59 69
PPR_long Pentacotripeptide-repeat region of PRORP 3.8E-05 13 27.00 62 155
PPR_2 PPR repeat family 9.7E-09 26 30.00 79 125
PPR PPR repeat 0.2 2 25.00 84 109
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.053 3 21.90 89 124
Coatomer_E Coatomer epsilon subunit 0.0035 7 20.40 99 177
PPR_3 Pentatricopeptide repeat domain 1.6E-10 31 25.00 102 157
RabGAP-TBC Rab-GTPase-TBC domain 0.029 4 24.50 103 136
PPR_1 PPR repeat 2E-11 34 23.80 108 139
PPR_2 PPR repeat family 1.4E-15 47 30.00 112 160
PPR PPR repeat 2.9E-09 27 25.00 114 143
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.041 3 25.90 132 176
RabGAP-TBC Rab-GTPase-TBC domain 0.18 2 24.50 136 182
Phage_TAC_10 Phage tail assembly chaperone 0.088 3 25.00 142 180
PPR_1 PPR repeat 1.6E-12 37 23.80 143 175
ATP13 Mitochondrial ATPase expression 0.00094 9 26.70 145 176
PPR_2 PPR repeat family 2E-17 53 30.00 146 193
PPR PPR repeat 7.4E-08 23 25.00 149 178
AEP1 ATPase expression protein 1 0.71 -1 27.00 149 185
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-09 28 27.00 164 251
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.83 -1 21.90 167 190
PPR_3 Pentatricopeptide repeat domain 4.8E-12 36 25.00 170 226
DUF1421 Protein of unknown function (DUF1421) 0.002 8 20.00 170 185
PPR_1 PPR repeat 6.3E-12 35 23.80 177 210
ATP13 Mitochondrial ATPase expression 0.027 5 26.70 180 211
PPR_2 PPR repeat family 7.1E-18 55 30.00 181 230
PPR PPR repeat 1.9E-08 24 25.00 184 214
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.3 0 25.90 186 237
SelB-wing_2 Elongation factor SelB, winged helix 0.54 1 21.50 199 213
PPR_1 PPR repeat 1.4E-14 44 23.80 212 245
PPR_2 PPR repeat family 9.5E-14 42 30.00 216 265
ATP13 Mitochondrial ATPase expression 0.068 3 26.70 216 244
PPR PPR repeat 2.3E-08 24 25.00 219 246
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.014 5 21.90 229 266
MRP-S27 Mitochondrial 28S ribosomal protein S27 7.3E-06 15 25.90 239 352
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.23 2 26.10 240 265
PPR_3 Pentatricopeptide repeat domain 4.3E-14 43 25.00 240 298
PPR_1 PPR repeat 1.7E-09 28 23.80 249 280
PPR_2 PPR repeat family 2.4E-18 56 30.00 252 300
PPR PPR repeat 2.3E-08 24 25.00 254 284
PPR_long Pentacotripeptide-repeat region of PRORP 7.8E-12 35 27.00 260 364
DED Death effector domain 0.093 3 22.00 267 283
Coatomer_E Coatomer epsilon subunit 0.014 5 20.40 268 321
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.58 -1 21.90 273 295
RabGAP-TBC Rab-GTPase-TBC domain 0.14 2 24.50 274 315
PPR_1 PPR repeat 2.5E-13 40 23.80 282 314
PPR_2 PPR repeat family 7.9E-17 51 30.00 286 335
PPR PPR repeat 7E-09 26 25.00 289 319
AEP1 ATPase expression protein 1 0.24 0 27.00 289 326
PPR_long Pentacotripeptide-repeat region of PRORP 4.6E-08 23 27.00 308 389
PPR_3 Pentatricopeptide repeat domain 2.5E-14 43 25.00 309 367
SelB-wing_2 Elongation factor SelB, winged helix 0.0077 7 21.50 315 341
ATP13 Mitochondrial ATPase expression 0.61 0 26.70 319 348
PPR_1 PPR repeat 6.3E-11 32 23.80 319 349
PPR_2 PPR repeat family 2.2E-20 63 30.00 321 369
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.017 6 26.10 323 384
AEP1 ATPase expression protein 1 0.017 4 27.00 324 357
PPR PPR repeat 6.6E-11 32 25.00 324 353
Coatomer_E Coatomer epsilon subunit 0.49 0 20.40 328 413
RabGAP-TBC Rab-GTPase-TBC domain 0.015 5 24.50 340 370
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-08 22 27.00 343 423
PPR_3 Pentatricopeptide repeat domain 5.6E-12 36 25.00 345 403
PPR_1 PPR repeat 7.6E-12 35 23.80 353 384
Phage_TAC_10 Phage tail assembly chaperone 0.05 4 25.00 355 388
PPR PPR repeat 3.9E-09 27 25.00 359 389
AEP1 ATPase expression protein 1 0.016 4 27.00 361 408
PPR_2 PPR repeat family 1.6E-06 19 30.00 374 400
PPR_1 PPR repeat 3.2E-19 59 23.80 387 420
PPR_2 PPR repeat family 5.6E-21 65 30.00 391 438
ATP13 Mitochondrial ATPase expression 0.48 1 26.70 391 421
Phage_TAC_10 Phage tail assembly chaperone 0.67 0 25.00 392 409
PPR PPR repeat 1.9E-13 40 25.00 394 424
DED Death effector domain 0.031 5 22.00 404 427
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-14 44 27.00 405 513
PPR_3 Pentatricopeptide repeat domain 1.1E-17 54 25.00 415 471
PPR_1 PPR repeat 6.7E-11 32 23.80 422 455
ATP13 Mitochondrial ATPase expression 0.082 3 26.70 425 492
PPR_2 PPR repeat family 2.1E-18 57 30.00 427 475
PPR PPR repeat 5.1E-09 26 25.00 429 459
MRP-S27 Mitochondrial 28S ribosomal protein S27 3.7E-06 16 25.90 429 489
AEP1 ATPase expression protein 1 0.064 2 27.00 429 473
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.044 3 21.90 448 476
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.074 4 26.10 449 475
PPR_1 PPR repeat 1.6E-14 44 23.80 458 488
SelB-wing_2 Elongation factor SelB, winged helix 0.47 1 21.50 460 480
PPR_2 PPR repeat family 6.7E-21 65 30.00 461 510
PPR PPR repeat 1.2E-08 25 25.00 465 491
PPR_3 Pentatricopeptide repeat domain 3.8E-06 17 25.00 469 506
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.31 2 26.10 475 510
PPR_1 PPR repeat 1.5E-10 31 23.80 494 514
PPR PPR repeat 6.3E-06 17 25.00 499 516

528

PPR_3
PPR_1
PPR_long
PPR_2
PPR
ECSIT
Coatomer_E
PPR_3
RabGAP-TBC
PPR_1
PPR_2
PPR
MRP-S27
RabGAP-TBC
Phage_TAC_10
PPR_1
ATP13
PPR_2
PPR
AEP1
PPR_long
ECSIT
PPR_3
DUF1421
PPR_1
ATP13
PPR_2
PPR
MRP-S27
SelB-wing_2
PPR_1
PPR_2
ATP13
PPR
ECSIT
MRP-S27
RPM2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
DED
Coatomer_E
ECSIT
RabGAP-TBC
PPR_1
PPR_2
PPR
AEP1
PPR_long
PPR_3
SelB-wing_2
ATP13
PPR_1
PPR_2
RPM2
AEP1
PPR
Coatomer_E
RabGAP-TBC
PPR_long
PPR_3
PPR_1
Phage_TAC_10
PPR
AEP1
PPR_2
PPR_1
PPR_2
ATP13
Phage_TAC_10
PPR
DED
PPR_long
PPR_3
PPR_1
ATP13
PPR_2
PPR
MRP-S27
AEP1
ECSIT
RPM2
PPR_1
SelB-wing_2
PPR_2
PPR
PPR_3
RPM2
PPR_1
PPR

References:

AEP1

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

Phage_TAC_10

SelB-wing_2
12145214 Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB. EMBO J. 2002;21:4145-4153.

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

ATP13

RabGAP-TBC

DED
9582077 NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Nature 1998;392:941-945.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF1421

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.013	6	25.00	44	90
PPR_1	PPR repeat	0.35	1	23.80	59	69
PPR_long	Pentacotripeptide-repeat region of PRORP	3.8E-05	13	27.00	62	155
PPR_2	PPR repeat family	9.7E-09	26	30.00	79	125
PPR	PPR repeat	0.2	2	25.00	84	109
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.053	3	21.90	89	124
Coatomer_E	Coatomer epsilon subunit	0.0035	7	20.40	99	177
PPR_3	Pentatricopeptide repeat domain	1.6E-10	31	25.00	102	157
RabGAP-TBC	Rab-GTPase-TBC domain	0.029	4	24.50	103	136
PPR_1	PPR repeat	2E-11	34	23.80	108	139
PPR_2	PPR repeat family	1.4E-15	47	30.00	112	160
PPR	PPR repeat	2.9E-09	27	25.00	114	143
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.041	3	25.90	132	176
RabGAP-TBC	Rab-GTPase-TBC domain	0.18	2	24.50	136	182
Phage_TAC_10	Phage tail assembly chaperone	0.088	3	25.00	142	180
PPR_1	PPR repeat	1.6E-12	37	23.80	143	175
ATP13	Mitochondrial ATPase expression	0.00094	9	26.70	145	176
PPR_2	PPR repeat family	2E-17	53	30.00	146	193
PPR	PPR repeat	7.4E-08	23	25.00	149	178
AEP1	ATPase expression protein 1	0.71	-1	27.00	149	185
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-09	28	27.00	164	251
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.83	-1	21.90	167	190
PPR_3	Pentatricopeptide repeat domain	4.8E-12	36	25.00	170	226
DUF1421	Protein of unknown function (DUF1421)	0.002	8	20.00	170	185
PPR_1	PPR repeat	6.3E-12	35	23.80	177	210
ATP13	Mitochondrial ATPase expression	0.027	5	26.70	180	211
PPR_2	PPR repeat family	7.1E-18	55	30.00	181	230
PPR	PPR repeat	1.9E-08	24	25.00	184	214
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.3	0	25.90	186	237
SelB-wing_2	Elongation factor SelB, winged helix	0.54	1	21.50	199	213
PPR_1	PPR repeat	1.4E-14	44	23.80	212	245
PPR_2	PPR repeat family	9.5E-14	42	30.00	216	265
ATP13	Mitochondrial ATPase expression	0.068	3	26.70	216	244
PPR	PPR repeat	2.3E-08	24	25.00	219	246
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.014	5	21.90	229	266
MRP-S27	Mitochondrial 28S ribosomal protein S27	7.3E-06	15	25.90	239	352
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.23	2	26.10	240	265
PPR_3	Pentatricopeptide repeat domain	4.3E-14	43	25.00	240	298
PPR_1	PPR repeat	1.7E-09	28	23.80	249	280
PPR_2	PPR repeat family	2.4E-18	56	30.00	252	300
PPR	PPR repeat	2.3E-08	24	25.00	254	284
PPR_long	Pentacotripeptide-repeat region of PRORP	7.8E-12	35	27.00	260	364
DED	Death effector domain	0.093	3	22.00	267	283
Coatomer_E	Coatomer epsilon subunit	0.014	5	20.40	268	321
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.58	-1	21.90	273	295
RabGAP-TBC	Rab-GTPase-TBC domain	0.14	2	24.50	274	315
PPR_1	PPR repeat	2.5E-13	40	23.80	282	314
PPR_2	PPR repeat family	7.9E-17	51	30.00	286	335
PPR	PPR repeat	7E-09	26	25.00	289	319
AEP1	ATPase expression protein 1	0.24	0	27.00	289	326
PPR_long	Pentacotripeptide-repeat region of PRORP	4.6E-08	23	27.00	308	389
PPR_3	Pentatricopeptide repeat domain	2.5E-14	43	25.00	309	367
SelB-wing_2	Elongation factor SelB, winged helix	0.0077	7	21.50	315	341
ATP13	Mitochondrial ATPase expression	0.61	0	26.70	319	348
PPR_1	PPR repeat	6.3E-11	32	23.80	319	349
PPR_2	PPR repeat family	2.2E-20	63	30.00	321	369
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.017	6	26.10	323	384
AEP1	ATPase expression protein 1	0.017	4	27.00	324	357
PPR	PPR repeat	6.6E-11	32	25.00	324	353
Coatomer_E	Coatomer epsilon subunit	0.49	0	20.40	328	413
RabGAP-TBC	Rab-GTPase-TBC domain	0.015	5	24.50	340	370
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-08	22	27.00	343	423
PPR_3	Pentatricopeptide repeat domain	5.6E-12	36	25.00	345	403
PPR_1	PPR repeat	7.6E-12	35	23.80	353	384
Phage_TAC_10	Phage tail assembly chaperone	0.05	4	25.00	355	388
PPR	PPR repeat	3.9E-09	27	25.00	359	389
AEP1	ATPase expression protein 1	0.016	4	27.00	361	408
PPR_2	PPR repeat family	1.6E-06	19	30.00	374	400
PPR_1	PPR repeat	3.2E-19	59	23.80	387	420
PPR_2	PPR repeat family	5.6E-21	65	30.00	391	438
ATP13	Mitochondrial ATPase expression	0.48	1	26.70	391	421
Phage_TAC_10	Phage tail assembly chaperone	0.67	0	25.00	392	409
PPR	PPR repeat	1.9E-13	40	25.00	394	424
DED	Death effector domain	0.031	5	22.00	404	427
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-14	44	27.00	405	513
PPR_3	Pentatricopeptide repeat domain	1.1E-17	54	25.00	415	471
PPR_1	PPR repeat	6.7E-11	32	23.80	422	455
ATP13	Mitochondrial ATPase expression	0.082	3	26.70	425	492
PPR_2	PPR repeat family	2.1E-18	57	30.00	427	475
PPR	PPR repeat	5.1E-09	26	25.00	429	459
MRP-S27	Mitochondrial 28S ribosomal protein S27	3.7E-06	16	25.90	429	489
AEP1	ATPase expression protein 1	0.064	2	27.00	429	473
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.044	3	21.90	448	476
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.074	4	26.10	449	475
PPR_1	PPR repeat	1.6E-14	44	23.80	458	488
SelB-wing_2	Elongation factor SelB, winged helix	0.47	1	21.50	460	480
PPR_2	PPR repeat family	6.7E-21	65	30.00	461	510
PPR	PPR repeat	1.2E-08	25	25.00	465	491
PPR_3	Pentatricopeptide repeat domain	3.8E-06	17	25.00	469	506
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.31	2	26.10	475	510
PPR_1	PPR repeat	1.5E-10	31	23.80	494	514
PPR	PPR repeat	6.3E-06	17	25.00	499	516