c2pfam

AT3G49725.1 :

Domain Description Evalue Bits GA Start End
GTP-bdg_N GTP-binding GTPase N-terminal 1.1E-16 51 25.40 158 232
GTP-bdg_M GTP-binding GTPase Middle Region 1.4E-20 63 29.50 235 334
Virul_Fac Putative bacterial virulence factor 0.00014 10 25.00 328 369
ABC_tran ABC transporter 6E-05 13 23.10 340 369
AAA_23 AAA domain 8.2E-05 13 27.00 344 371
AAA_29 P-loop containing region of AAA domain 3.7E-05 13 27.00 344 366
FeoB_N Ferrous iron transport protein B 2.2E-05 14 21.20 347 380
GTP_EFTU Elongation factor Tu GTP binding domain 0.0016 8 20.20 347 369
MMR_HSR1 GTPase of unknown function 1.6E-20 63 24.50 348 469
Dynamin_N Dynamin family 1.6E-05 15 21.00 348 383
Virul_Fac Putative bacterial virulence factor 0.024 2 25.00 413 504
GTP_EFTU Elongation factor Tu GTP binding domain 6.3E-05 12 20.20 424 581
CDC45 CDC45-like protein 0.00046 8 26.70 426 523

620

GTP-bdg_N
GTP-bdg_M
Virul_Fac
ABC_tran
AAA_23
AAA_29
FeoB_N
GTP_EFTU
MMR_HSR1
Dynamin_N
Virul_Fac
GTP_EFTU
CDC45

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

GTP-bdg_N

AAA_29

CDC45
9660782 The human homolog of Saccharomyces cerevisiae CDC45. J Biol Chem 1998;273:18205-18209.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

GTP-bdg_M

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_23

Virul_Fac

Domain	Description	Evalue	Bits	GA	Start	End
GTP-bdg_N	GTP-binding GTPase N-terminal	1.1E-16	51	25.40	158	232
GTP-bdg_M	GTP-binding GTPase Middle Region	1.4E-20	63	29.50	235	334
Virul_Fac	Putative bacterial virulence factor	0.00014	10	25.00	328	369
ABC_tran	ABC transporter	6E-05	13	23.10	340	369
AAA_23	AAA domain	8.2E-05	13	27.00	344	371
AAA_29	P-loop containing region of AAA domain	3.7E-05	13	27.00	344	366
FeoB_N	Ferrous iron transport protein B	2.2E-05	14	21.20	347	380
GTP_EFTU	Elongation factor Tu GTP binding domain	0.0016	8	20.20	347	369
MMR_HSR1	GTPase of unknown function	1.6E-20	63	24.50	348	469
Dynamin_N	Dynamin family	1.6E-05	15	21.00	348	383
Virul_Fac	Putative bacterial virulence factor	0.024	2	25.00	413	504
GTP_EFTU	Elongation factor Tu GTP binding domain	6.3E-05	12	20.20	424	581
CDC45	CDC45-like protein	0.00046	8	26.70	426	523