c2pfam

AT1G09410.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0086 7 30.00 19 42
PPR PPR repeat 0.01 7 25.00 21 42
PPR_1 PPR repeat 0.061 4 23.80 29 41
PPR_2 PPR repeat family 5.9E-08 23 30.00 47 79
PPR PPR repeat 7.1E-09 26 25.00 50 79
PPR_1 PPR repeat 0.0023 8 23.80 50 74
TPR_19 Tetratricopeptide repeat 0.0035 8 25.00 69 109
PPR_1 PPR repeat 5.2E-08 23 23.80 78 105
PPR_3 Pentatricopeptide repeat domain 0.00063 10 25.00 78 108
PPR_2 PPR repeat family 3.8E-09 27 30.00 78 110
PPR PPR repeat 1.9E-10 31 25.00 80 110
TPR_14 Tetratricopeptide repeat 0.022 6 23.50 84 103
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.23 2 28.10 85 102
AEP1 ATPase expression protein 1 0.39 0 27.00 85 121
TPR_8 Tetratricopeptide repeat 0.2 3 25.70 87 102
TPR_2 Tetratricopeptide repeat 0.027 5 22.40 89 103
DUF3368 Domain of unknown function (DUF3368) 0.028 5 27.30 90 105
PPR_long Pentacotripeptide-repeat region of PRORP 0.24 1 27.00 90 142
PPR_2 PPR repeat family 6.1E-08 23 30.00 108 140
PPR_1 PPR repeat 3.5E-06 17 23.80 108 136
PPR_3 Pentatricopeptide repeat domain 0.00036 11 25.00 109 142
PPR PPR repeat 2.9E-09 27 25.00 111 140
TPR_14 Tetratricopeptide repeat 0.83 1 23.50 113 133
PPR_2 PPR repeat family 7.3E-06 17 30.00 139 165
PPR_1 PPR repeat 0.0034 8 23.80 140 165
PPR PPR repeat 3.4E-06 18 25.00 142 168
TPR_14 Tetratricopeptide repeat 0.22 3 23.50 146 167
TPR_19 Tetratricopeptide repeat 0.0048 8 25.00 152 200
TPR_7 Tetratricopeptide repeat 1 0 27.90 152 166
PPR_2 PPR repeat family 2.3E-09 28 30.00 174 203
PPR PPR repeat 3.4E-11 33 25.00 176 202
PPR_1 PPR repeat 4E-12 36 23.80 176 199
PPR_3 Pentatricopeptide repeat domain 0.043 4 25.00 176 201
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.057 4 28.10 179 201
TPR_2 Tetratricopeptide repeat 0.3 2 22.40 183 197
DUF3368 Domain of unknown function (DUF3368) 0.021 5 27.30 184 199
TPR_19 Tetratricopeptide repeat 0.0026 9 25.00 184 233
TPR_14 Tetratricopeptide repeat 0.76 1 23.50 184 198
TPR_4 Tetratricopeptide repeat 0.27 3 22.00 186 197
TPR_10 Tetratricopeptide repeat 0.39 1 27.50 186 197
CARD Caspase recruitment domain 0.0035 8 23.60 190 235
PPR_3 Pentatricopeptide repeat domain 0.011 6 25.00 202 232
PPR_1 PPR repeat 1.3E-09 28 23.80 202 229
PPR_2 PPR repeat family 2.1E-07 21 30.00 202 232
PPR PPR repeat 3.8E-09 27 25.00 204 232
TPR_10 Tetratricopeptide repeat 0.72 0 27.50 212 226
PPR_2 PPR repeat family 4.9E-07 20 30.00 233 261
PPR_1 PPR repeat 3.7E-07 20 23.80 234 260
PPR PPR repeat 1.8E-10 31 25.00 235 261
PPR_3 Pentatricopeptide repeat domain 0.07 4 25.00 236 260
TPR_14 Tetratricopeptide repeat 0.6 2 23.50 241 258
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.61 0 28.10 242 257
TPR_10 Tetratricopeptide repeat 0.098 3 27.50 243 258
TPR_7 Tetratricopeptide repeat 0.79 1 27.90 244 258
TPR_4 Tetratricopeptide repeat 0.45 2 22.00 244 258
TPR_8 Tetratricopeptide repeat 0.76 1 25.70 244 258
TPR_19 Tetratricopeptide repeat 0.12 3 25.00 244 260
TPR_2 Tetratricopeptide repeat 0.2 3 22.40 244 258
DUF3368 Domain of unknown function (DUF3368) 0.7 0 27.30 245 260
PPR_3 Pentatricopeptide repeat domain 0.0025 8 25.00 265 294
PPR_2 PPR repeat family 5.9E-09 26 30.00 265 295
PPR PPR repeat 1.1E-08 25 25.00 267 295
PPR_1 PPR repeat 3.9E-06 17 23.80 269 292
DUF3368 Domain of unknown function (DUF3368) 0.1 3 27.30 277 294
PPR_long Pentacotripeptide-repeat region of PRORP 0.0045 7 27.00 279 382
PPR_2 PPR repeat family 8.2E-05 13 30.00 295 341
PPR PPR repeat 1.2E-05 16 25.00 298 327
PPR_3 Pentatricopeptide repeat domain 0.002 9 25.00 308 341
AEP1 ATPase expression protein 1 0.00057 9 27.00 358 407
PPR PPR repeat 0.027 5 25.00 370 396
PPR_2 PPR repeat family 1.2E-12 38 30.00 395 443
PPR_3 Pentatricopeptide repeat domain 3.6E-05 14 25.00 396 443
PPR_1 PPR repeat 2.1E-07 21 23.80 396 423
PPR PPR repeat 1.9E-11 34 25.00 398 427
PPR_long Pentacotripeptide-repeat region of PRORP 4.6E-05 13 27.00 415 496
PPR_1 PPR repeat 0.45 1 23.80 430 460
PPR_3 Pentatricopeptide repeat domain 0.0074 7 25.00 430 480
PPR_2 PPR repeat family 0.00037 11 30.00 431 467
PPR PPR repeat 8.8E-05 13 25.00 434 461
PPR_1 PPR repeat 6.5E-07 19 23.80 464 496
PPR_2 PPR repeat family 0.00062 10 30.00 471 509
PPR PPR repeat 1.8E-05 15 25.00 472 496
TPR_14 Tetratricopeptide repeat 0.32 3 23.50 472 500
TPR_10 Tetratricopeptide repeat 0.4 1 27.50 478 492
TPR_19 Tetratricopeptide repeat 0.37 2 25.00 481 499
TPR_14 Tetratricopeptide repeat 0.12 4 23.50 503 541
TPR_19 Tetratricopeptide repeat 0.024 6 25.00 516 553
TPR_2 Tetratricopeptide repeat 0.18 3 22.40 516 534
TPR_8 Tetratricopeptide repeat 0.17 3 25.70 516 534
TPR_17 Tetratricopeptide repeat 0.00033 11 24.40 523 551
TPR_10 Tetratricopeptide repeat 0.091 3 27.50 537 553
TPR_7 Tetratricopeptide repeat 0.019 6 27.90 537 560
PPR PPR repeat 0.029 5 25.00 537 563
TPR_2 Tetratricopeptide repeat 0.6 1 22.40 538 553
DYW_deaminase DYW family of nucleic acid deaminases 0 127 31.60 570 695

705

PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
TPR_19
PPR_1
PPR_3
PPR_2
PPR
TPR_14
SPOB_a
AEP1
TPR_8
TPR_2
DUF3368
PPR_long
PPR_2
PPR_1
PPR_3
PPR
TPR_14
PPR_2
PPR_1
PPR
TPR_14
TPR_19
TPR_7
PPR_2
PPR
PPR_1
PPR_3
SPOB_a
TPR_2
DUF3368
TPR_19
TPR_14
TPR_4
TPR_10
CARD
PPR_3
PPR_1
PPR_2
PPR
TPR_10
PPR_2
PPR_1
PPR
PPR_3
TPR_14
SPOB_a
TPR_10
TPR_7
TPR_4
TPR_8
TPR_19
TPR_2
DUF3368
PPR_3
PPR_2
PPR
PPR_1
DUF3368
PPR_long
PPR_2
PPR
PPR_3
AEP1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_14
TPR_10
TPR_19
TPR_14
TPR_19
TPR_2
TPR_8
TPR_17
TPR_10
TPR_7
PPR
TPR_2
DYW_deaminase

References:

AEP1

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

TPR_4

CARD
9175472 The CARD domain: a new apoptotic signalling motif. Trends Biochem Sci 1997;22:155-156.
9015748 The interleukin-1 beta converting enzyme family of cysteine proteases. J Cell Biochem 1997;64:2-10.

DYW_deaminase

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

DUF3368

TPR_7

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0086	7	30.00	19	42
PPR	PPR repeat	0.01	7	25.00	21	42
PPR_1	PPR repeat	0.061	4	23.80	29	41
PPR_2	PPR repeat family	5.9E-08	23	30.00	47	79
PPR	PPR repeat	7.1E-09	26	25.00	50	79
PPR_1	PPR repeat	0.0023	8	23.80	50	74
TPR_19	Tetratricopeptide repeat	0.0035	8	25.00	69	109
PPR_1	PPR repeat	5.2E-08	23	23.80	78	105
PPR_3	Pentatricopeptide repeat domain	0.00063	10	25.00	78	108
PPR_2	PPR repeat family	3.8E-09	27	30.00	78	110
PPR	PPR repeat	1.9E-10	31	25.00	80	110
TPR_14	Tetratricopeptide repeat	0.022	6	23.50	84	103
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.23	2	28.10	85	102
AEP1	ATPase expression protein 1	0.39	0	27.00	85	121
TPR_8	Tetratricopeptide repeat	0.2	3	25.70	87	102
TPR_2	Tetratricopeptide repeat	0.027	5	22.40	89	103
DUF3368	Domain of unknown function (DUF3368)	0.028	5	27.30	90	105
PPR_long	Pentacotripeptide-repeat region of PRORP	0.24	1	27.00	90	142
PPR_2	PPR repeat family	6.1E-08	23	30.00	108	140
PPR_1	PPR repeat	3.5E-06	17	23.80	108	136
PPR_3	Pentatricopeptide repeat domain	0.00036	11	25.00	109	142
PPR	PPR repeat	2.9E-09	27	25.00	111	140
TPR_14	Tetratricopeptide repeat	0.83	1	23.50	113	133
PPR_2	PPR repeat family	7.3E-06	17	30.00	139	165
PPR_1	PPR repeat	0.0034	8	23.80	140	165
PPR	PPR repeat	3.4E-06	18	25.00	142	168
TPR_14	Tetratricopeptide repeat	0.22	3	23.50	146	167
TPR_19	Tetratricopeptide repeat	0.0048	8	25.00	152	200
TPR_7	Tetratricopeptide repeat	1	0	27.90	152	166
PPR_2	PPR repeat family	2.3E-09	28	30.00	174	203
PPR	PPR repeat	3.4E-11	33	25.00	176	202
PPR_1	PPR repeat	4E-12	36	23.80	176	199
PPR_3	Pentatricopeptide repeat domain	0.043	4	25.00	176	201
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.057	4	28.10	179	201
TPR_2	Tetratricopeptide repeat	0.3	2	22.40	183	197
DUF3368	Domain of unknown function (DUF3368)	0.021	5	27.30	184	199
TPR_19	Tetratricopeptide repeat	0.0026	9	25.00	184	233
TPR_14	Tetratricopeptide repeat	0.76	1	23.50	184	198
TPR_4	Tetratricopeptide repeat	0.27	3	22.00	186	197
TPR_10	Tetratricopeptide repeat	0.39	1	27.50	186	197
CARD	Caspase recruitment domain	0.0035	8	23.60	190	235
PPR_3	Pentatricopeptide repeat domain	0.011	6	25.00	202	232
PPR_1	PPR repeat	1.3E-09	28	23.80	202	229
PPR_2	PPR repeat family	2.1E-07	21	30.00	202	232
PPR	PPR repeat	3.8E-09	27	25.00	204	232
TPR_10	Tetratricopeptide repeat	0.72	0	27.50	212	226
PPR_2	PPR repeat family	4.9E-07	20	30.00	233	261
PPR_1	PPR repeat	3.7E-07	20	23.80	234	260
PPR	PPR repeat	1.8E-10	31	25.00	235	261
PPR_3	Pentatricopeptide repeat domain	0.07	4	25.00	236	260
TPR_14	Tetratricopeptide repeat	0.6	2	23.50	241	258
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.61	0	28.10	242	257
TPR_10	Tetratricopeptide repeat	0.098	3	27.50	243	258
TPR_7	Tetratricopeptide repeat	0.79	1	27.90	244	258
TPR_4	Tetratricopeptide repeat	0.45	2	22.00	244	258
TPR_8	Tetratricopeptide repeat	0.76	1	25.70	244	258
TPR_19	Tetratricopeptide repeat	0.12	3	25.00	244	260
TPR_2	Tetratricopeptide repeat	0.2	3	22.40	244	258
DUF3368	Domain of unknown function (DUF3368)	0.7	0	27.30	245	260
PPR_3	Pentatricopeptide repeat domain	0.0025	8	25.00	265	294
PPR_2	PPR repeat family	5.9E-09	26	30.00	265	295
PPR	PPR repeat	1.1E-08	25	25.00	267	295
PPR_1	PPR repeat	3.9E-06	17	23.80	269	292
DUF3368	Domain of unknown function (DUF3368)	0.1	3	27.30	277	294
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0045	7	27.00	279	382
PPR_2	PPR repeat family	8.2E-05	13	30.00	295	341
PPR	PPR repeat	1.2E-05	16	25.00	298	327
PPR_3	Pentatricopeptide repeat domain	0.002	9	25.00	308	341
AEP1	ATPase expression protein 1	0.00057	9	27.00	358	407
PPR	PPR repeat	0.027	5	25.00	370	396
PPR_2	PPR repeat family	1.2E-12	38	30.00	395	443
PPR_3	Pentatricopeptide repeat domain	3.6E-05	14	25.00	396	443
PPR_1	PPR repeat	2.1E-07	21	23.80	396	423
PPR	PPR repeat	1.9E-11	34	25.00	398	427
PPR_long	Pentacotripeptide-repeat region of PRORP	4.6E-05	13	27.00	415	496
PPR_1	PPR repeat	0.45	1	23.80	430	460
PPR_3	Pentatricopeptide repeat domain	0.0074	7	25.00	430	480
PPR_2	PPR repeat family	0.00037	11	30.00	431	467
PPR	PPR repeat	8.8E-05	13	25.00	434	461
PPR_1	PPR repeat	6.5E-07	19	23.80	464	496
PPR_2	PPR repeat family	0.00062	10	30.00	471	509
PPR	PPR repeat	1.8E-05	15	25.00	472	496
TPR_14	Tetratricopeptide repeat	0.32	3	23.50	472	500
TPR_10	Tetratricopeptide repeat	0.4	1	27.50	478	492
TPR_19	Tetratricopeptide repeat	0.37	2	25.00	481	499
TPR_14	Tetratricopeptide repeat	0.12	4	23.50	503	541
TPR_19	Tetratricopeptide repeat	0.024	6	25.00	516	553
TPR_2	Tetratricopeptide repeat	0.18	3	22.40	516	534
TPR_8	Tetratricopeptide repeat	0.17	3	25.70	516	534
TPR_17	Tetratricopeptide repeat	0.00033	11	24.40	523	551
TPR_10	Tetratricopeptide repeat	0.091	3	27.50	537	553
TPR_7	Tetratricopeptide repeat	0.019	6	27.90	537	560
PPR	PPR repeat	0.029	5	25.00	537	563
TPR_2	Tetratricopeptide repeat	0.6	1	22.40	538	553
DYW_deaminase	DYW family of nucleic acid deaminases	0	127	31.60	570	695