c2pfam

AT2G19380.1 :

Domain Description Evalue Bits GA Start End
zf-ACC Acetyl-coA carboxylase zinc finger domain 3.1E-06 17 24.20 3 26
zf-LYAR LYAR-type C2HC zinc finger 0.46 0 20.70 4 21
zf-C2H2_4 C2H2-type zinc finger 0.034 5 27.00 4 23
YhfH YhfH-like protein 0.11 2 27.00 5 13
zf-LYAR LYAR-type C2HC zinc finger 2.5E-15 46 20.70 30 57
zf-C2H2_4 C2H2-type zinc finger 0.84 1 27.00 30 42
YhfH YhfH-like protein 0.00094 9 27.00 31 50
zf-ACC Acetyl-coA carboxylase zinc finger domain 0.54 0 24.20 31 38
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.013 6 26.90 76 115
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 6E-05 13 22.60 84 110
zf-met Zinc-finger of C2H2 type 5.3E-10 29 21.20 85 109
zf-U1 U1 zinc finger 0.04 4 20.60 85 113
zf-C2H2_4 C2H2-type zinc finger 0.021 6 27.00 86 104
zf-SCNM1 Zinc-finger of sodium channel modifier 1 0.055 3 27.00 102 110
DUF3086 Protein of unknown function (DUF3086) 0.015 4 21.10 109 211
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.00075 10 26.90 133 183
zf-met Zinc-finger of C2H2 type 9.8E-11 32 21.20 154 178
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 9.9E-08 22 22.60 154 179
zf-U1 U1 zinc finger 0.017 5 20.60 155 183
zf-C2H2_4 C2H2-type zinc finger 0.053 5 27.00 155 173
zf-SCNM1 Zinc-finger of sodium channel modifier 1 0.002 8 27.00 167 179
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.0023 8 22.60 224 249
zf-met Zinc-finger of C2H2 type 1.6E-09 28 21.20 224 248
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.018 5 26.90 224 251
zf-C2H2_4 C2H2-type zinc finger 0.034 5 27.00 225 243
zf-SCNM1 Zinc-finger of sodium channel modifier 1 0.057 3 27.00 239 249
zf-U1 U1 zinc finger 0.0055 6 20.60 241 253
DUF3086 Protein of unknown function (DUF3086) 0.0053 6 21.10 334 376
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.092 2 20.70 363 398
RRM_7 RNA recognition motif 2.9E-06 17 27.00 408 475
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-19 59 20.70 410 469

613

zf-ACC
zf-LYAR
zf-C2H2_4
YhfH
zf-LYAR
zf-C2H2_4
YhfH
zf-ACC
zf-C2H2_2
zf-C2H2_jaz
zf-met
zf-U1
zf-C2H2_4
zf-SCNM1
DUF3086
zf-C2H2_2
zf-met
zf-C2H2_jaz
zf-U1
zf-C2H2_4
zf-SCNM1
zf-C2H2_jaz
zf-met
zf-C2H2_2
zf-C2H2_4
zf-SCNM1
zf-U1
DUF3086
RRM_1
RRM_7
RRM_1

References:

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

zf-met

zf-LYAR
8491376 LYAR, a novel nucleolar protein with zinc finger DNA-binding motifs, is involved in cell growth regulation. Genes Dev. 1993;7:735-748.

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

zf-C2H2_4

zf-C2H2_2

zf-SCNM1

YhfH

zf-ACC

zf-U1
12486009 The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites. EMBO J 2002;21:6882-6892.

DUF3086

RRM_7

Domain	Description	Evalue	Bits	GA	Start	End
zf-ACC	Acetyl-coA carboxylase zinc finger domain	3.1E-06	17	24.20	3	26
zf-LYAR	LYAR-type C2HC zinc finger	0.46	0	20.70	4	21
zf-C2H2_4	C2H2-type zinc finger	0.034	5	27.00	4	23
YhfH	YhfH-like protein	0.11	2	27.00	5	13
zf-LYAR	LYAR-type C2HC zinc finger	2.5E-15	46	20.70	30	57
zf-C2H2_4	C2H2-type zinc finger	0.84	1	27.00	30	42
YhfH	YhfH-like protein	0.00094	9	27.00	31	50
zf-ACC	Acetyl-coA carboxylase zinc finger domain	0.54	0	24.20	31	38
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.013	6	26.90	76	115
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	6E-05	13	22.60	84	110
zf-met	Zinc-finger of C2H2 type	5.3E-10	29	21.20	85	109
zf-U1	U1 zinc finger	0.04	4	20.60	85	113
zf-C2H2_4	C2H2-type zinc finger	0.021	6	27.00	86	104
zf-SCNM1	Zinc-finger of sodium channel modifier 1	0.055	3	27.00	102	110
DUF3086	Protein of unknown function (DUF3086)	0.015	4	21.10	109	211
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.00075	10	26.90	133	183
zf-met	Zinc-finger of C2H2 type	9.8E-11	32	21.20	154	178
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	9.9E-08	22	22.60	154	179
zf-U1	U1 zinc finger	0.017	5	20.60	155	183
zf-C2H2_4	C2H2-type zinc finger	0.053	5	27.00	155	173
zf-SCNM1	Zinc-finger of sodium channel modifier 1	0.002	8	27.00	167	179
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.0023	8	22.60	224	249
zf-met	Zinc-finger of C2H2 type	1.6E-09	28	21.20	224	248
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.018	5	26.90	224	251
zf-C2H2_4	C2H2-type zinc finger	0.034	5	27.00	225	243
zf-SCNM1	Zinc-finger of sodium channel modifier 1	0.057	3	27.00	239	249
zf-U1	U1 zinc finger	0.0055	6	20.60	241	253
DUF3086	Protein of unknown function (DUF3086)	0.0053	6	21.10	334	376
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.092	2	20.70	363	398
RRM_7	RNA recognition motif	2.9E-06	17	27.00	408	475
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.4E-19	59	20.70	410	469