c2pfam

AT2G19490.1 :

Domain Description Evalue Bits GA Start End
DTHCT DTHCT (NUC029) region 0.24 3 19.70 36 58
RecA recA bacterial DNA recombination protein 0 396 20.10 61 324
Rad51 Rad51 9.7E-13 38 20.20 90 283
ATPase KaiC 1.7E-09 28 26.60 95 152
AAA_25 AAA domain 1.3E-06 19 27.00 108 207
ABC_tran ABC transporter 2.2E-06 19 23.10 109 207
AAA_35 AAA-like domain 3.8E-06 16 27.00 111 156
AAA_16 AAA ATPase domain 4.8E-06 18 32.60 112 245
AAA_14 AAA domain 7.5E-05 13 27.00 112 159
AAA_30 AAA domain 0.00099 9 27.00 113 167
AAA_24 AAA domain 4.3E-07 20 27.00 113 203
AAA_33 AAA domain 8.1E-05 13 27.00 114 150
AAA_22 AAA domain 3.9E-06 18 27.00 114 203
ATPase_2 ATPase domain predominantly from Archaea 1.5E-07 22 33.20 114 155
AAA_18 AAA domain 0.0011 10 29.40 115 200
AAA ATPase family associated with various cellular activities (AAA) 4.4E-06 18 20.80 117 227
CobU Cobinamide kinase / cobinamide phosphate guanyltransferase 2.3E-05 15 21.50 117 237
TK Thymidine kinase 9.1E-05 13 20.60 117 199
AAA_23 AAA domain 0.028 5 27.00 117 128
CLP1_P mRNA cleavage and polyadenylation factor CLP1 P-loop 0.00027 11 26.60 119 148
AAA_23 AAA domain 0.00028 12 27.00 292 398
ABC_tran ABC transporter 0.23 3 23.10 341 379
AAA_30 AAA domain 0.31 1 27.00 342 384
DUF3891 Protein of unknown function (DUF3891) 0.00037 11 24.00 347 388
DTHCT DTHCT (NUC029) region 0.0063 8 19.70 356 407

430

DTHCT
RecA
Rad51
ATPase
AAA_25
ABC_tran
AAA_35
AAA_16
AAA_14
AAA_30
AAA_24
AAA_33
AAA_22
ATPase_2
AAA_18
AAA
CobU
TK
AAA_23
CLP1_P
AAA_23
ABC_tran
AAA_30
DUF3891
DTHCT

References:

AAA_16

ATPase_2

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

CobU
9601028 Three-dimensional structure of adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase from Salmonella typhimurium determined to 2.3 A resolution,. Biochemistry 1998;37:7686-7695.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Rad51
16169964 Arabidopsis RAD51C gene is important for homologous recombination in meiosis and mitosis. Plant Physiol. 2005;139:896-908.

AAA_22

CLP1_P

DUF3891

AAA_35

AAA_33

RecA

TK

AAA_30

AAA_18

AAA_25

AAA_24

AAA_23

ATPase

DTHCT
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

Domain	Description	Evalue	Bits	GA	Start	End
DTHCT	DTHCT (NUC029) region	0.24	3	19.70	36	58
RecA	recA bacterial DNA recombination protein	0	396	20.10	61	324
Rad51	Rad51	9.7E-13	38	20.20	90	283
ATPase	KaiC	1.7E-09	28	26.60	95	152
AAA_25	AAA domain	1.3E-06	19	27.00	108	207
ABC_tran	ABC transporter	2.2E-06	19	23.10	109	207
AAA_35	AAA-like domain	3.8E-06	16	27.00	111	156
AAA_16	AAA ATPase domain	4.8E-06	18	32.60	112	245
AAA_14	AAA domain	7.5E-05	13	27.00	112	159
AAA_30	AAA domain	0.00099	9	27.00	113	167
AAA_24	AAA domain	4.3E-07	20	27.00	113	203
AAA_33	AAA domain	8.1E-05	13	27.00	114	150
AAA_22	AAA domain	3.9E-06	18	27.00	114	203
ATPase_2	ATPase domain predominantly from Archaea	1.5E-07	22	33.20	114	155
AAA_18	AAA domain	0.0011	10	29.40	115	200
AAA	ATPase family associated with various cellular activities (AAA)	4.4E-06	18	20.80	117	227
CobU	Cobinamide kinase / cobinamide phosphate guanyltransferase	2.3E-05	15	21.50	117	237
TK	Thymidine kinase	9.1E-05	13	20.60	117	199
AAA_23	AAA domain	0.028	5	27.00	117	128
CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	0.00027	11	26.60	119	148
AAA_23	AAA domain	0.00028	12	27.00	292	398
ABC_tran	ABC transporter	0.23	3	23.10	341	379
AAA_30	AAA domain	0.31	1	27.00	342	384
DUF3891	Protein of unknown function (DUF3891)	0.00037	11	24.00	347	388
DTHCT	DTHCT (NUC029) region	0.0063	8	19.70	356	407