c2pfam

AT2G20330.1 :

Domain Description Evalue Bits GA Start End
DNA_pol_phi DNA polymerase phi 0.0014 6 19.50 102 161
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.11 1 29.50 170 230
WD40 WD domain, G-beta repeat 2E-07 21 21.00 172 205
eIF2A Eukaryotic translation initiation factor eIF2A 0.00018 11 20.50 217 255
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0049 6 22.90 220 245
WD40 WD domain, G-beta repeat 0.013 6 21.00 223 245
Nucleoporin_N Nup133 N terminal like 0.0039 5 23.70 252 309
WD40 WD domain, G-beta repeat 3.9E-06 17 21.00 272 307
Nup160 Nucleoporin Nup120/160 0.0022 6 19.20 281 310
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.26 -1 29.50 293 311
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.6 -2 29.50 318 318
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00017 11 22.90 328 357
eIF2A Eukaryotic translation initiation factor eIF2A 1.7E-05 14 20.50 328 440
WD40 WD domain, G-beta repeat 9.2E-06 16 21.00 329 355
Nucleoporin_N Nup133 N terminal like 0.0022 6 23.70 362 404
WD40 WD domain, G-beta repeat 1.3E-08 25 21.00 368 401
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0014 8 22.90 370 406
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0019 6 29.50 372 405
Cytochrom_D1 Cytochrome D1 heme domain 3.3E-05 12 19.80 377 438
Nup160 Nucleoporin Nup120/160 0.0054 4 19.20 378 426
WD40 WD domain, G-beta repeat 0.047 4 21.00 422 438
eIF2A Eukaryotic translation initiation factor eIF2A 0.039 3 20.50 440 485

648

DNA_pol_phi
Ge1_WD40
WD40
eIF2A
ANAPC4_WD40
WD40
Nucleoporin_N
WD40
Nup160
Ge1_WD40
Ge1_WD40
ANAPC4_WD40
eIF2A
WD40
Nucleoporin_N
WD40
ANAPC4_WD40
Ge1_WD40
Cytochrom_D1
Nup160
WD40
eIF2A

References:

ANAPC4_WD40

Ge1_WD40

DNA_pol_phi
12093911 The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA. Proc Natl Acad Sci U S A 2002;99:9133-9138.

Cytochrom_D1
9311786 Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme. Nature 1997;389:406-412.

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

Nucleoporin_N
15557116 Structural and functional analysis of Nup133 domains reveals modular building blocks of the nuclear pore complex. J Cell Biol. 2004;167:591-597.

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

Domain	Description	Evalue	Bits	GA	Start	End
DNA_pol_phi	DNA polymerase phi	0.0014	6	19.50	102	161
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.11	1	29.50	170	230
WD40	WD domain, G-beta repeat	2E-07	21	21.00	172	205
eIF2A	Eukaryotic translation initiation factor eIF2A	0.00018	11	20.50	217	255
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0049	6	22.90	220	245
WD40	WD domain, G-beta repeat	0.013	6	21.00	223	245
Nucleoporin_N	Nup133 N terminal like	0.0039	5	23.70	252	309
WD40	WD domain, G-beta repeat	3.9E-06	17	21.00	272	307
Nup160	Nucleoporin Nup120/160	0.0022	6	19.20	281	310
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.26	-1	29.50	293	311
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.6	-2	29.50	318	318
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00017	11	22.90	328	357
eIF2A	Eukaryotic translation initiation factor eIF2A	1.7E-05	14	20.50	328	440
WD40	WD domain, G-beta repeat	9.2E-06	16	21.00	329	355
Nucleoporin_N	Nup133 N terminal like	0.0022	6	23.70	362	404
WD40	WD domain, G-beta repeat	1.3E-08	25	21.00	368	401
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0014	8	22.90	370	406
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0019	6	29.50	372	405
Cytochrom_D1	Cytochrome D1 heme domain	3.3E-05	12	19.80	377	438
Nup160	Nucleoporin Nup120/160	0.0054	4	19.20	378	426
WD40	WD domain, G-beta repeat	0.047	4	21.00	422	438
eIF2A	Eukaryotic translation initiation factor eIF2A	0.039	3	20.50	440	485