c2pfam

AT2G20540.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.014 4 27.00 35 73
PPR_1 PPR repeat 0.0013 8 23.80 70 83
PPR_3 Pentatricopeptide repeat domain 0.0037 7 25.00 71 84
PPR_2 PPR repeat family 2.1E-09 27 30.00 71 120
PPR PPR repeat 0.0012 9 25.00 75 102
PPR_3 Pentatricopeptide repeat domain 0.00026 11 25.00 141 173
PPR_1 PPR repeat 0.00026 10 23.80 144 170
PPR_2 PPR repeat family 8.8E-08 22 30.00 144 174
PPR PPR repeat 1.5E-06 18 25.00 148 174
TPR_19 Tetratricopeptide repeat 0.44 1 25.00 159 195
PPR_1 PPR repeat 1.6E-07 21 23.80 172 201
PPR_3 Pentatricopeptide repeat domain 0.0017 8 25.00 173 204
PPR_2 PPR repeat family 1.6E-08 24 30.00 173 204
PPR PPR repeat 9.7E-11 31 25.00 176 204
TPR_14 Tetratricopeptide repeat 0.12 3 23.50 178 203
TPR_8 Tetratricopeptide repeat 0.31 1 25.70 178 195
TPR_7 Tetratricopeptide repeat 0.19 2 27.90 184 202
TPR_2 Tetratricopeptide repeat 0.8 0 22.40 185 199
PPR_1 PPR repeat 0.00063 9 23.80 205 233
PPR_2 PPR repeat family 2.5E-11 33 30.00 205 251
PPR_3 Pentatricopeptide repeat domain 0.0065 6 25.00 206 240
PPR PPR repeat 8.1E-10 28 25.00 207 237
PPR_long Pentacotripeptide-repeat region of PRORP 0.064 2 27.00 224 251
PPR_3 Pentatricopeptide repeat domain 0.058 3 25.00 271 305
PPR_2 PPR repeat family 2.1E-06 17 30.00 277 303
PPR PPR repeat 1.6E-06 18 25.00 279 306
TPR_7 Tetratricopeptide repeat 0.099 3 27.90 279 301
PPR_1 PPR repeat 0.00011 11 23.80 280 303
PPR_2 PPR repeat family 4.9E-14 42 30.00 305 353
PPR_1 PPR repeat 2.9E-07 20 23.80 306 334
PPR_3 Pentatricopeptide repeat domain 2.7E-10 30 25.00 306 352
PPR PPR repeat 8.6E-10 28 25.00 308 336
PPR_long Pentacotripeptide-repeat region of PRORP 1.4E-06 17 27.00 323 404
PPR_1 PPR repeat 0.94 -1 23.80 338 368
PPR PPR repeat 5.7E-06 16 25.00 344 370
PPR_2 PPR repeat family 0.031 4 30.00 348 370
PPR_3 Pentatricopeptide repeat domain 8.1E-05 12 25.00 372 404
PPR_1 PPR repeat 6.9E-06 15 23.80 375 404
PPR_2 PPR repeat family 0.0012 9 30.00 380 405
PPR PPR repeat 1E-05 15 25.00 380 405
TPR_14 Tetratricopeptide repeat 0.081 4 23.50 383 400
TPR_19 Tetratricopeptide repeat 0.3 1 25.00 384 407
TPR_8 Tetratricopeptide repeat 0.46 1 25.70 411 443
TPR_14 Tetratricopeptide repeat 0.12 3 23.50 413 451
TPR_19 Tetratricopeptide repeat 0.0012 9 25.00 424 466
TPR_2 Tetratricopeptide repeat 0.39 1 22.40 424 443
TPR_2 Tetratricopeptide repeat 0.036 4 22.40 447 462
TPR_8 Tetratricopeptide repeat 0.064 3 25.70 447 459
PPR PPR repeat 0.072 3 25.00 447 473
TPR_7 Tetratricopeptide repeat 0.0017 8 27.90 447 463

534

PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_19
PPR_1
PPR_3
PPR_2
PPR
TPR_14
TPR_8
TPR_7
TPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_3
PPR_2
PPR
TPR_7
PPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_19
TPR_8
TPR_14
TPR_19
TPR_2
TPR_2
TPR_8
PPR
TPR_7

References:

TPR_7

TPR_8

TPR_19

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.014	4	27.00	35	73
PPR_1	PPR repeat	0.0013	8	23.80	70	83
PPR_3	Pentatricopeptide repeat domain	0.0037	7	25.00	71	84
PPR_2	PPR repeat family	2.1E-09	27	30.00	71	120
PPR	PPR repeat	0.0012	9	25.00	75	102
PPR_3	Pentatricopeptide repeat domain	0.00026	11	25.00	141	173
PPR_1	PPR repeat	0.00026	10	23.80	144	170
PPR_2	PPR repeat family	8.8E-08	22	30.00	144	174
PPR	PPR repeat	1.5E-06	18	25.00	148	174
TPR_19	Tetratricopeptide repeat	0.44	1	25.00	159	195
PPR_1	PPR repeat	1.6E-07	21	23.80	172	201
PPR_3	Pentatricopeptide repeat domain	0.0017	8	25.00	173	204
PPR_2	PPR repeat family	1.6E-08	24	30.00	173	204
PPR	PPR repeat	9.7E-11	31	25.00	176	204
TPR_14	Tetratricopeptide repeat	0.12	3	23.50	178	203
TPR_8	Tetratricopeptide repeat	0.31	1	25.70	178	195
TPR_7	Tetratricopeptide repeat	0.19	2	27.90	184	202
TPR_2	Tetratricopeptide repeat	0.8	0	22.40	185	199
PPR_1	PPR repeat	0.00063	9	23.80	205	233
PPR_2	PPR repeat family	2.5E-11	33	30.00	205	251
PPR_3	Pentatricopeptide repeat domain	0.0065	6	25.00	206	240
PPR	PPR repeat	8.1E-10	28	25.00	207	237
PPR_long	Pentacotripeptide-repeat region of PRORP	0.064	2	27.00	224	251
PPR_3	Pentatricopeptide repeat domain	0.058	3	25.00	271	305
PPR_2	PPR repeat family	2.1E-06	17	30.00	277	303
PPR	PPR repeat	1.6E-06	18	25.00	279	306
TPR_7	Tetratricopeptide repeat	0.099	3	27.90	279	301
PPR_1	PPR repeat	0.00011	11	23.80	280	303
PPR_2	PPR repeat family	4.9E-14	42	30.00	305	353
PPR_1	PPR repeat	2.9E-07	20	23.80	306	334
PPR_3	Pentatricopeptide repeat domain	2.7E-10	30	25.00	306	352
PPR	PPR repeat	8.6E-10	28	25.00	308	336
PPR_long	Pentacotripeptide-repeat region of PRORP	1.4E-06	17	27.00	323	404
PPR_1	PPR repeat	0.94	-1	23.80	338	368
PPR	PPR repeat	5.7E-06	16	25.00	344	370
PPR_2	PPR repeat family	0.031	4	30.00	348	370
PPR_3	Pentatricopeptide repeat domain	8.1E-05	12	25.00	372	404
PPR_1	PPR repeat	6.9E-06	15	23.80	375	404
PPR_2	PPR repeat family	0.0012	9	30.00	380	405
PPR	PPR repeat	1E-05	15	25.00	380	405
TPR_14	Tetratricopeptide repeat	0.081	4	23.50	383	400
TPR_19	Tetratricopeptide repeat	0.3	1	25.00	384	407
TPR_8	Tetratricopeptide repeat	0.46	1	25.70	411	443
TPR_14	Tetratricopeptide repeat	0.12	3	23.50	413	451
TPR_19	Tetratricopeptide repeat	0.0012	9	25.00	424	466
TPR_2	Tetratricopeptide repeat	0.39	1	22.40	424	443
TPR_2	Tetratricopeptide repeat	0.036	4	22.40	447	462
TPR_8	Tetratricopeptide repeat	0.064	3	25.70	447	459
PPR	PPR repeat	0.072	3	25.00	447	473
TPR_7	Tetratricopeptide repeat	0.0017	8	27.90	447	463