c2pfam

AT2G20710.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.45 0 30.00 76 101
PPR_long Pentacotripeptide-repeat region of PRORP 0.049 2 27.00 80 132
PPR_1 PPR repeat 0.85 -1 23.80 120 130
PPR_2 PPR repeat family 4.1E-06 17 30.00 138 169
PPR_3 Pentatricopeptide repeat domain 2.6E-07 20 25.00 141 185
PPR PPR repeat 5.3E-08 22 25.00 142 170
PPR_1 PPR repeat 0.00022 11 23.80 142 166
PPR_long Pentacotripeptide-repeat region of PRORP 2E-05 13 27.00 152 226
PPR PPR repeat 5.1E-08 22 25.00 177 203
PPR_3 Pentatricopeptide repeat domain 2.6E-07 20 25.00 177 219
PPR_2 PPR repeat family 1.5E-10 31 30.00 177 219
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.33 0 28.10 184 202
PPR_1 PPR repeat 0.47 0 23.80 194 201
PPR_3 Pentatricopeptide repeat domain 1.3E-05 15 25.00 195 235
PPR_1 PPR repeat 0.18 1 23.80 205 214
PPR PPR repeat 0.23 2 25.00 210 233
PPR_long Pentacotripeptide-repeat region of PRORP 0.0033 6 27.00 245 304
TPR_14 Tetratricopeptide repeat 0.019 6 23.50 246 271
TPR_12 Tetratricopeptide repeat 0.018 5 30.10 247 274
TPR_2 Tetratricopeptide repeat 0.11 3 22.40 248 271
TPR_1 Tetratricopeptide repeat 0.12 2 20.40 252 270
PPR_1 PPR repeat 0.019 4 23.80 253 270
PPR PPR repeat 0.00032 11 25.00 253 270
PPR_2 PPR repeat family 0.3 1 30.00 253 268
PPR_3 Pentatricopeptide repeat domain 0.6 0 25.00 274 274
PPR_2 PPR repeat family 0.13 2 30.00 282 305
PPR PPR repeat 0.026 5 25.00 284 306
PPR PPR repeat 0.00054 10 25.00 318 341
PPR_2 PPR repeat family 0.034 4 30.00 318 340
PPR_long Pentacotripeptide-repeat region of PRORP 0.25 0 27.00 320 376
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.005 6 28.10 321 340
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0018 8 28.10 356 379
PPR_1 PPR repeat 3.2E-07 20 23.80 356 374
PPR_2 PPR repeat family 2.5E-05 14 30.00 356 378
PPR PPR repeat 3.5E-07 20 25.00 356 374
TPR_1 Tetratricopeptide repeat 0.96 -1 20.40 360 371
TPR_1 Tetratricopeptide repeat 0.00015 11 20.40 387 414
TPR_12 Tetratricopeptide repeat 0.013 5 30.10 387 415
TPR_14 Tetratricopeptide repeat 0.07 4 23.50 388 414
TPR_2 Tetratricopeptide repeat 4.2E-05 13 22.40 388 414
PPR PPR repeat 0.022 5 25.00 388 410

490

PPR_2
PPR_long
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR_long
PPR
PPR_3
PPR_2
SPOB_a
PPR_1
PPR_3
PPR_1
PPR
PPR_long
TPR_14
TPR_12
TPR_2
TPR_1
PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR_long
SPOB_a
SPOB_a
PPR_1
PPR_2
PPR
TPR_1
TPR_1
TPR_12
TPR_14
TPR_2
PPR

References:

TPR_12

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

SPOB_a

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.45	0	30.00	76	101
PPR_long	Pentacotripeptide-repeat region of PRORP	0.049	2	27.00	80	132
PPR_1	PPR repeat	0.85	-1	23.80	120	130
PPR_2	PPR repeat family	4.1E-06	17	30.00	138	169
PPR_3	Pentatricopeptide repeat domain	2.6E-07	20	25.00	141	185
PPR	PPR repeat	5.3E-08	22	25.00	142	170
PPR_1	PPR repeat	0.00022	11	23.80	142	166
PPR_long	Pentacotripeptide-repeat region of PRORP	2E-05	13	27.00	152	226
PPR	PPR repeat	5.1E-08	22	25.00	177	203
PPR_3	Pentatricopeptide repeat domain	2.6E-07	20	25.00	177	219
PPR_2	PPR repeat family	1.5E-10	31	30.00	177	219
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.33	0	28.10	184	202
PPR_1	PPR repeat	0.47	0	23.80	194	201
PPR_3	Pentatricopeptide repeat domain	1.3E-05	15	25.00	195	235
PPR_1	PPR repeat	0.18	1	23.80	205	214
PPR	PPR repeat	0.23	2	25.00	210	233
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0033	6	27.00	245	304
TPR_14	Tetratricopeptide repeat	0.019	6	23.50	246	271
TPR_12	Tetratricopeptide repeat	0.018	5	30.10	247	274
TPR_2	Tetratricopeptide repeat	0.11	3	22.40	248	271
TPR_1	Tetratricopeptide repeat	0.12	2	20.40	252	270
PPR_1	PPR repeat	0.019	4	23.80	253	270
PPR	PPR repeat	0.00032	11	25.00	253	270
PPR_2	PPR repeat family	0.3	1	30.00	253	268
PPR_3	Pentatricopeptide repeat domain	0.6	0	25.00	274	274
PPR_2	PPR repeat family	0.13	2	30.00	282	305
PPR	PPR repeat	0.026	5	25.00	284	306
PPR	PPR repeat	0.00054	10	25.00	318	341
PPR_2	PPR repeat family	0.034	4	30.00	318	340
PPR_long	Pentacotripeptide-repeat region of PRORP	0.25	0	27.00	320	376
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.005	6	28.10	321	340
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0018	8	28.10	356	379
PPR_1	PPR repeat	3.2E-07	20	23.80	356	374
PPR_2	PPR repeat family	2.5E-05	14	30.00	356	378
PPR	PPR repeat	3.5E-07	20	25.00	356	374
TPR_1	Tetratricopeptide repeat	0.96	-1	20.40	360	371
TPR_1	Tetratricopeptide repeat	0.00015	11	20.40	387	414
TPR_12	Tetratricopeptide repeat	0.013	5	30.10	387	415
TPR_14	Tetratricopeptide repeat	0.07	4	23.50	388	414
TPR_2	Tetratricopeptide repeat	4.2E-05	13	22.40	388	414
PPR	PPR repeat	0.022	5	25.00	388	410