c2pfam

AT2G22290.1 :

Domain Description Evalue Bits GA Start End
RsgA_GTPase RsgA GTPase 0.014 5 30.00 7 30
Arf ADP-ribosylation factor family 1.4E-17 54 20.30 9 130
AAA_7 P-loop containing dynein motor region 6.9E-05 12 25.80 9 50
Gtr1_RagA Gtr1/RagA G protein conserved region 2E-07 20 20.10 11 131
Ras Ras family 0 187 20.80 11 169
Roc Ras of Complex, Roc, domain of DAPkinase 0 125 27.00 11 126
SRPRB Signal recognition particle receptor beta subunit 6.7E-08 22 20.50 11 91
MMR_HSR1 GTPase of unknown function 8.5E-08 22 24.50 12 118
TniB Bacterial TniB protein 0.00037 10 20.10 12 37
Dynamin_N Dynamin family 0.006 6 21.00 13 30
GTP_EFTU Elongation factor Tu GTP binding domain 3.2E-08 23 20.20 36 170
Dynamin_N Dynamin family 0.033 4 21.00 70 118
Regulator_TrmB Archaeal transcriptional regulator TrmB 9.8E-06 15 22.20 79 151
RsgA_GTPase RsgA GTPase 4.5E-05 13 30.00 85 166
FeoB_N Ferrous iron transport protein B 0.00025 10 21.20 115 166

207

RsgA_GTPase
Arf
AAA_7
Gtr1_RagA
Ras
Roc
SRPRB
MMR_HSR1
TniB
Dynamin_N
GTP_EFTU
Dynamin_N
Regulator_TrmB
RsgA_GTPase
FeoB_N

References:

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

Regulator_TrmB
16473881 Crystal structure of the sugar binding domain of the archaeal transcriptional regulator TrmB. J Biol Chem. 2006;281:10976-10982.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

RsgA_GTPase

AAA_7

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

Roc

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
RsgA_GTPase	RsgA GTPase	0.014	5	30.00	7	30
Arf	ADP-ribosylation factor family	1.4E-17	54	20.30	9	130
AAA_7	P-loop containing dynein motor region	6.9E-05	12	25.80	9	50
Gtr1_RagA	Gtr1/RagA G protein conserved region	2E-07	20	20.10	11	131
Ras	Ras family	0	187	20.80	11	169
Roc	Ras of Complex, Roc, domain of DAPkinase	0	125	27.00	11	126
SRPRB	Signal recognition particle receptor beta subunit	6.7E-08	22	20.50	11	91
MMR_HSR1	GTPase of unknown function	8.5E-08	22	24.50	12	118
TniB	Bacterial TniB protein	0.00037	10	20.10	12	37
Dynamin_N	Dynamin family	0.006	6	21.00	13	30
GTP_EFTU	Elongation factor Tu GTP binding domain	3.2E-08	23	20.20	36	170
Dynamin_N	Dynamin family	0.033	4	21.00	70	118
Regulator_TrmB	Archaeal transcriptional regulator TrmB	9.8E-06	15	22.20	79	151
RsgA_GTPase	RsgA GTPase	4.5E-05	13	30.00	85	166
FeoB_N	Ferrous iron transport protein B	0.00025	10	21.20	115	166