c2pfam

AT2G22410.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.3 0 23.80 115 144
PPR_3 Pentatricopeptide repeat domain 0.23 1 25.00 116 166
PPR_2 PPR repeat family 4.4E-12 35 30.00 116 167
PPR PPR repeat 5.3E-07 19 25.00 119 149
PPR_2 PPR repeat family 0.0029 7 30.00 194 216
PPR_3 Pentatricopeptide repeat domain 0.56 0 25.00 195 216
PPR_1 PPR repeat 0.005 6 23.80 198 216
PPR PPR repeat 0.00098 9 25.00 198 216
PPR_1 PPR repeat 9.1E-06 15 23.80 220 249
PPR_3 Pentatricopeptide repeat domain 7.1E-06 15 25.00 221 258
PPR_2 PPR repeat family 9.8E-13 37 30.00 221 267
PPR_long Pentacotripeptide-repeat region of PRORP 1.7E-05 13 27.00 222 284
PPR PPR repeat 4.9E-10 29 25.00 223 253
PPR_3 Pentatricopeptide repeat domain 2.2E-06 17 25.00 248 303
PPR_1 PPR repeat 0.56 -1 23.80 252 259
PPR PPR repeat 0.014 5 25.00 262 288
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-05 13 27.00 264 451
ATP13 Mitochondrial ATPase expression 0.035 3 26.70 282 319
PPR_3 Pentatricopeptide repeat domain 0.0035 7 25.00 283 323
PPR_1 PPR repeat 0.00084 8 23.80 296 317
PPR PPR repeat 3.6E-06 16 25.00 296 321
PPR_2 PPR repeat family 2.8E-05 14 30.00 296 321
TPR_14 Tetratricopeptide repeat 0.62 1 23.50 298 318
PPR_2 PPR repeat family 3.4E-08 23 30.00 322 352
PPR_1 PPR repeat 5.8E-09 25 23.80 322 350
PPR_3 Pentatricopeptide repeat domain 0.011 5 25.00 323 354
PPR PPR repeat 2.9E-11 32 25.00 324 353
TPR_14 Tetratricopeptide repeat 0.33 2 23.50 326 356
PPR_3 Pentatricopeptide repeat domain 0.00012 11 25.00 345 391
PPR_2 PPR repeat family 2.9E-12 36 30.00 352 399
PPR_1 PPR repeat 0.001 8 23.80 353 381
PPR PPR repeat 8.7E-08 21 25.00 355 383
PPR_3 Pentatricopeptide repeat domain 0.0009 9 25.00 376 408
PPR_3 Pentatricopeptide repeat domain 0.13 2 25.00 419 448
PPR_2 PPR repeat family 0.0017 8 30.00 427 453
PPR PPR repeat 2.9E-06 17 25.00 428 452
PPR_1 PPR repeat 0.00076 8 23.80 428 448
ATP13 Mitochondrial ATPase expression 0.12 1 26.70 428 452
DYW_deaminase DYW family of nucleic acid deaminases 0.092 2 31.60 441 487
PPR_1 PPR repeat 1.6E-05 14 23.80 454 481
PPR_3 Pentatricopeptide repeat domain 9.6E-07 18 25.00 454 500
PPR_2 PPR repeat family 3.2E-13 39 30.00 454 502
PPR PPR repeat 3.3E-08 23 25.00 457 486
ATP13 Mitochondrial ATPase expression 0.33 0 26.70 459 482
TPR_14 Tetratricopeptide repeat 0.94 0 23.50 465 489
PPR_long Pentacotripeptide-repeat region of PRORP 0.00032 9 27.00 472 545
PPR_1 PPR repeat 0.0014 8 23.80 485 516
PPR PPR repeat 5.2E-05 13 25.00 492 519
PPR_2 PPR repeat family 0.00025 11 30.00 496 535
PPR_1 PPR repeat 1.7E-05 14 23.80 522 552
PPR PPR repeat 1.5E-06 18 25.00 528 553
PPR_2 PPR repeat family 0.0029 7 30.00 529 552
TPR_14 Tetratricopeptide repeat 0.021 5 23.50 559 597
PPR PPR repeat 0.17 2 25.00 560 579
PPR PPR repeat 0.009 6 25.00 595 623
PPR_2 PPR repeat family 0.11 2 30.00 597 624
DYW_deaminase DYW family of nucleic acid deaminases 1.7E-06 17 31.60 627 667

681

PPR_1
PPR_3
PPR_2
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR_long
PPR
PPR_3
PPR_1
PPR
PPR_long
ATP13
PPR_3
PPR_1
PPR
PPR_2
TPR_14
PPR_2
PPR_1
PPR_3
PPR
TPR_14
PPR_3
PPR_2
PPR_1
PPR
PPR_3
PPR_3
PPR_2
PPR
PPR_1
ATP13
DYW_deaminase
PPR_1
PPR_3
PPR_2
PPR
ATP13
TPR_14
PPR_long
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
TPR_14
PPR
PPR
PPR_2
DYW_deaminase

References:

DYW_deaminase

ATP13

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.3	0	23.80	115	144
PPR_3	Pentatricopeptide repeat domain	0.23	1	25.00	116	166
PPR_2	PPR repeat family	4.4E-12	35	30.00	116	167
PPR	PPR repeat	5.3E-07	19	25.00	119	149
PPR_2	PPR repeat family	0.0029	7	30.00	194	216
PPR_3	Pentatricopeptide repeat domain	0.56	0	25.00	195	216
PPR_1	PPR repeat	0.005	6	23.80	198	216
PPR	PPR repeat	0.00098	9	25.00	198	216
PPR_1	PPR repeat	9.1E-06	15	23.80	220	249
PPR_3	Pentatricopeptide repeat domain	7.1E-06	15	25.00	221	258
PPR_2	PPR repeat family	9.8E-13	37	30.00	221	267
PPR_long	Pentacotripeptide-repeat region of PRORP	1.7E-05	13	27.00	222	284
PPR	PPR repeat	4.9E-10	29	25.00	223	253
PPR_3	Pentatricopeptide repeat domain	2.2E-06	17	25.00	248	303
PPR_1	PPR repeat	0.56	-1	23.80	252	259
PPR	PPR repeat	0.014	5	25.00	262	288
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-05	13	27.00	264	451
ATP13	Mitochondrial ATPase expression	0.035	3	26.70	282	319
PPR_3	Pentatricopeptide repeat domain	0.0035	7	25.00	283	323
PPR_1	PPR repeat	0.00084	8	23.80	296	317
PPR	PPR repeat	3.6E-06	16	25.00	296	321
PPR_2	PPR repeat family	2.8E-05	14	30.00	296	321
TPR_14	Tetratricopeptide repeat	0.62	1	23.50	298	318
PPR_2	PPR repeat family	3.4E-08	23	30.00	322	352
PPR_1	PPR repeat	5.8E-09	25	23.80	322	350
PPR_3	Pentatricopeptide repeat domain	0.011	5	25.00	323	354
PPR	PPR repeat	2.9E-11	32	25.00	324	353
TPR_14	Tetratricopeptide repeat	0.33	2	23.50	326	356
PPR_3	Pentatricopeptide repeat domain	0.00012	11	25.00	345	391
PPR_2	PPR repeat family	2.9E-12	36	30.00	352	399
PPR_1	PPR repeat	0.001	8	23.80	353	381
PPR	PPR repeat	8.7E-08	21	25.00	355	383
PPR_3	Pentatricopeptide repeat domain	0.0009	9	25.00	376	408
PPR_3	Pentatricopeptide repeat domain	0.13	2	25.00	419	448
PPR_2	PPR repeat family	0.0017	8	30.00	427	453
PPR	PPR repeat	2.9E-06	17	25.00	428	452
PPR_1	PPR repeat	0.00076	8	23.80	428	448
ATP13	Mitochondrial ATPase expression	0.12	1	26.70	428	452
DYW_deaminase	DYW family of nucleic acid deaminases	0.092	2	31.60	441	487
PPR_1	PPR repeat	1.6E-05	14	23.80	454	481
PPR_3	Pentatricopeptide repeat domain	9.6E-07	18	25.00	454	500
PPR_2	PPR repeat family	3.2E-13	39	30.00	454	502
PPR	PPR repeat	3.3E-08	23	25.00	457	486
ATP13	Mitochondrial ATPase expression	0.33	0	26.70	459	482
TPR_14	Tetratricopeptide repeat	0.94	0	23.50	465	489
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00032	9	27.00	472	545
PPR_1	PPR repeat	0.0014	8	23.80	485	516
PPR	PPR repeat	5.2E-05	13	25.00	492	519
PPR_2	PPR repeat family	0.00025	11	30.00	496	535
PPR_1	PPR repeat	1.7E-05	14	23.80	522	552
PPR	PPR repeat	1.5E-06	18	25.00	528	553
PPR_2	PPR repeat family	0.0029	7	30.00	529	552
TPR_14	Tetratricopeptide repeat	0.021	5	23.50	559	597
PPR	PPR repeat	0.17	2	25.00	560	579
PPR	PPR repeat	0.009	6	25.00	595	623
PPR_2	PPR repeat family	0.11	2	30.00	597	624
DYW_deaminase	DYW family of nucleic acid deaminases	1.7E-06	17	31.60	627	667