c2pfam

AT1G09900.1 :

Domain Description Evalue Bits GA Start End
Cytomega_UL20A Cytomegalovirus UL20A protein 2.1E-05 15 25.00 47 117
Arabino_trans_C EmbC C-terminal domain 0.00045 10 25.00 48 111
PPR_2 PPR repeat family 5.3E-07 20 30.00 109 149
PPR PPR repeat 0.032 5 25.00 113 132
PPR_long Pentacotripeptide-repeat region of PRORP 5.2E-07 20 27.00 113 200
PPR_1 PPR repeat 0.18 2 23.80 116 129
PPR_3 Pentatricopeptide repeat domain 3.3E-11 34 25.00 125 182
PPR_2 PPR repeat family 1.4E-13 41 30.00 135 184
PPR PPR repeat 4E-06 18 25.00 140 167
PPR_1 PPR repeat 2.4E-06 18 23.80 141 161
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0042 6 25.90 141 195
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.088 3 28.10 143 161
TPR_7 Tetratricopeptide repeat 0.18 3 27.90 147 161
Glyco_trans_4_3 Glycosyl transferase family 4 group 0.36 1 25.00 153 174
ATP13 Mitochondrial ATPase expression 0.0042 7 26.70 162 199
PPR_1 PPR repeat 7.9E-16 48 23.80 167 199
PPR_2 PPR repeat family 1.5E-10 32 30.00 170 198
Clathrin Region in Clathrin and VPS 0.17 2 23.60 171 229
PPR PPR repeat 6.9E-11 32 25.00 173 198
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.44 1 28.10 179 199
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.041 5 27.20 182 229
TPR_19 Tetratricopeptide repeat 0.017 6 25.00 185 232
AEP1 ATPase expression protein 1 0.0087 6 27.00 189 252
PPR_3 Pentatricopeptide repeat domain 1.6E-13 41 25.00 196 248
PPR_1 PPR repeat 1.6E-14 44 23.80 200 230
Vps23_core Vps23 core domain 0.059 4 20.60 201 233
ATP13 Mitochondrial ATPase expression 0.004 8 26.70 201 233
PPR_2 PPR repeat family 5.3E-20 62 30.00 202 251
PPR PPR repeat 1.5E-09 28 25.00 205 235
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.04 3 25.90 206 265
Clathrin Region in Clathrin and VPS 0.32 1 23.60 210 254
DUF3368 Domain of unknown function (DUF3368) 0.028 5 27.30 210 236
TPR_7 Tetratricopeptide repeat 0.94 0 27.90 214 231
TPR_14 Tetratricopeptide repeat 0.035 6 23.50 214 238
PPR_long Pentacotripeptide-repeat region of PRORP 2.1E-08 24 27.00 218 324
PPR_1 PPR repeat 2.9E-12 37 23.80 234 266
PPR PPR repeat 1.8E-07 22 25.00 240 270
Vps23_core Vps23 core domain 0.16 3 20.60 240 269
PPR_2 PPR repeat family 2.2E-13 41 30.00 250 286
Glyco_trans_4_3 Glycosyl transferase family 4 group 0.085 3 25.00 257 275
PPR_3 Pentatricopeptide repeat domain 6.8E-14 42 25.00 260 317
PPR_1 PPR repeat 2.1E-18 56 23.80 268 300
PPR_2 PPR repeat family 5E-21 65 30.00 272 321
Vps23_core Vps23 core domain 0.36 1 20.60 272 301
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.059 3 25.90 275 368
PPR PPR repeat 4.7E-11 33 25.00 275 305
Clathrin Region in Clathrin and VPS 0.0046 7 23.60 278 369
TPR_19 Tetratricopeptide repeat 0.075 4 25.00 286 301
TPR_14 Tetratricopeptide repeat 0.88 1 23.50 287 299
PPR_1 PPR repeat 1.6E-11 34 23.80 304 335
PPR PPR repeat 6.6E-07 20 25.00 310 340
PPR_2 PPR repeat family 4.1E-14 43 30.00 313 356
TPR_19 Tetratricopeptide repeat 1 1 25.00 320 337
PPR_long Pentacotripeptide-repeat region of PRORP 4.2E-12 36 27.00 330 440
PPR_3 Pentatricopeptide repeat domain 2E-13 41 25.00 330 388
PPR_1 PPR repeat 5.4E-14 42 23.80 338 370
PPR_2 PPR repeat family 2.2E-17 54 30.00 342 391
PPR PPR repeat 4.1E-09 27 25.00 345 375
Vps39_1 Vacuolar sorting protein 39 domain 1 0.52 1 21.40 347 378
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.72 1 27.20 350 374
DUF3368 Domain of unknown function (DUF3368) 0.36 1 27.30 356 374
PPR_1 PPR repeat 4.5E-12 36 23.80 374 406
PPR_2 PPR repeat family 4.3E-19 59 30.00 377 426
Vps23_core Vps23 core domain 0.056 4 20.60 378 409
PPR PPR repeat 1.4E-09 28 25.00 381 410
PPR_3 Pentatricopeptide repeat domain 2.5E-09 28 25.00 381 422
AEP1 ATPase expression protein 1 0.0037 7 27.00 382 441
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0038 7 28.10 385 407
MRP-S27 Mitochondrial 28S ribosomal protein S27 4E-05 13 25.90 385 440
ATP13 Mitochondrial ATPase expression 0.084 3 26.70 385 406
Clathrin Region in Clathrin and VPS 0.027 5 23.60 388 441
TPR_7 Tetratricopeptide repeat 0.046 5 27.90 390 405
TPR_19 Tetratricopeptide repeat 0.0027 9 25.00 392 441
TPR_14 Tetratricopeptide repeat 0.013 7 23.50 394 422
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.011 6 27.20 395 445
PPR_long Pentacotripeptide-repeat region of PRORP 1.6E-08 25 27.00 402 490
PPR_3 Pentatricopeptide repeat domain 3.1E-14 43 25.00 402 457
PPR_1 PPR repeat 3.7E-15 46 23.80 408 439
ATP13 Mitochondrial ATPase expression 0.0039 8 26.70 410 443
PPR_2 PPR repeat family 8.2E-19 58 30.00 412 461
PPR PPR repeat 4.8E-11 33 25.00 415 445
Vps23_core Vps23 core domain 0.037 5 20.60 415 440
TPR_7 Tetratricopeptide repeat 0.67 1 27.90 423 439
PPR_1 PPR repeat 1.3E-14 44 23.80 443 476
PPR_2 PPR repeat family 1E-16 51 30.00 450 495
PPR PPR repeat 8.3E-11 32 25.00 450 479
Clathrin Region in Clathrin and VPS 0.19 2 23.60 450 510
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.5 1 28.10 455 477
TPR_14 Tetratricopeptide repeat 0.15 4 23.50 459 482
TPR_19 Tetratricopeptide repeat 0.18 3 25.00 461 479
Glyco_trans_4_3 Glycosyl transferase family 4 group 0.13 2 25.00 462 492
PPR_long Pentacotripeptide-repeat region of PRORP 4.6E-11 33 27.00 469 585
PPR_3 Pentatricopeptide repeat domain 7.4E-14 42 25.00 470 526
ATP13 Mitochondrial ATPase expression 0.71 0 26.70 477 510
PPR_1 PPR repeat 9.4E-13 38 23.80 478 509
Clathrin Region in Clathrin and VPS 0.42 1 23.60 483 542
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0014 8 25.90 485 591
PPR PPR repeat 1.6E-09 28 25.00 485 515
PPR_2 PPR repeat family 1.2E-12 38 30.00 490 531
TPR_14 Tetratricopeptide repeat 0.16 4 23.50 490 510
TPR_7 Tetratricopeptide repeat 0.2 3 27.90 494 509
PPR_1 PPR repeat 2E-09 28 23.80 513 545
PPR_2 PPR repeat family 3.2E-16 50 30.00 517 565
PPR PPR repeat 5.5E-07 20 25.00 520 550
PPR_3 Pentatricopeptide repeat domain 0.00094 10 25.00 545 584
PPR_1 PPR repeat 5E-10 30 23.80 548 579
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0034 8 21.40 555 589
PPR PPR repeat 1.5E-07 22 25.00 556 585
PPR_2 PPR repeat family 0.0085 7 30.00 561 585

598

Cytomega_UL20A
Arabino_trans_C
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_1
MRP-S27
SPOB_a
TPR_7
Glyco_trans_4_3
ATP13
PPR_1
PPR_2
Clathrin
PPR
SPOB_a
ANAPC3
TPR_19
AEP1
PPR_3
PPR_1
Vps23_core
ATP13
PPR_2
PPR
MRP-S27
Clathrin
DUF3368
TPR_7
TPR_14
PPR_long
PPR_1
PPR
Vps23_core
PPR_2
Glyco_trans_4_3
PPR_3
PPR_1
PPR_2
Vps23_core
MRP-S27
PPR
Clathrin
TPR_19
TPR_14
PPR_1
PPR
PPR_2
TPR_19
PPR_long
PPR_3
PPR_1
PPR_2
PPR
Vps39_1
ANAPC3
DUF3368
PPR_1
PPR_2
Vps23_core
PPR
PPR_3
AEP1
SPOB_a
MRP-S27
ATP13
Clathrin
TPR_7
TPR_19
TPR_14
ANAPC3
PPR_long
PPR_3
PPR_1
ATP13
PPR_2
PPR
Vps23_core
TPR_7
PPR_1
PPR_2
PPR
Clathrin
SPOB_a
TPR_14
TPR_19
Glyco_trans_4_3
PPR_long
PPR_3
ATP13
PPR_1
Clathrin
MRP-S27
PPR
PPR_2
TPR_14
TPR_7
PPR_1
PPR_2
PPR
PPR_3
PPR_1
Vps39_1
PPR
PPR_2

References:

TPR_7

Glyco_trans_4_3

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

AEP1

Cytomega_UL20A
11928987 Characterisation of transcripts from the human cytomegalovirus genes TRL7, UL20a, UL36, UL65, UL94, US3 and US34. Virus Genes 2002;24:39-48.

ANAPC3

ATP13

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

DUF3368

Arabino_trans_C

Vps23_core
16615893 ESCRT-I core and ESCRT-II GLUE domain structures reveal role for GLUE in linking to ESCRT-I and membranes. Cell. 2006;125:99-111.

Domain	Description	Evalue	Bits	GA	Start	End
Cytomega_UL20A	Cytomegalovirus UL20A protein	2.1E-05	15	25.00	47	117
Arabino_trans_C	EmbC C-terminal domain	0.00045	10	25.00	48	111
PPR_2	PPR repeat family	5.3E-07	20	30.00	109	149
PPR	PPR repeat	0.032	5	25.00	113	132
PPR_long	Pentacotripeptide-repeat region of PRORP	5.2E-07	20	27.00	113	200
PPR_1	PPR repeat	0.18	2	23.80	116	129
PPR_3	Pentatricopeptide repeat domain	3.3E-11	34	25.00	125	182
PPR_2	PPR repeat family	1.4E-13	41	30.00	135	184
PPR	PPR repeat	4E-06	18	25.00	140	167
PPR_1	PPR repeat	2.4E-06	18	23.80	141	161
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0042	6	25.90	141	195
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.088	3	28.10	143	161
TPR_7	Tetratricopeptide repeat	0.18	3	27.90	147	161
Glyco_trans_4_3	Glycosyl transferase family 4 group	0.36	1	25.00	153	174
ATP13	Mitochondrial ATPase expression	0.0042	7	26.70	162	199
PPR_1	PPR repeat	7.9E-16	48	23.80	167	199
PPR_2	PPR repeat family	1.5E-10	32	30.00	170	198
Clathrin	Region in Clathrin and VPS	0.17	2	23.60	171	229
PPR	PPR repeat	6.9E-11	32	25.00	173	198
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.44	1	28.10	179	199
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.041	5	27.20	182	229
TPR_19	Tetratricopeptide repeat	0.017	6	25.00	185	232
AEP1	ATPase expression protein 1	0.0087	6	27.00	189	252
PPR_3	Pentatricopeptide repeat domain	1.6E-13	41	25.00	196	248
PPR_1	PPR repeat	1.6E-14	44	23.80	200	230
Vps23_core	Vps23 core domain	0.059	4	20.60	201	233
ATP13	Mitochondrial ATPase expression	0.004	8	26.70	201	233
PPR_2	PPR repeat family	5.3E-20	62	30.00	202	251
PPR	PPR repeat	1.5E-09	28	25.00	205	235
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.04	3	25.90	206	265
Clathrin	Region in Clathrin and VPS	0.32	1	23.60	210	254
DUF3368	Domain of unknown function (DUF3368)	0.028	5	27.30	210	236
TPR_7	Tetratricopeptide repeat	0.94	0	27.90	214	231
TPR_14	Tetratricopeptide repeat	0.035	6	23.50	214	238
PPR_long	Pentacotripeptide-repeat region of PRORP	2.1E-08	24	27.00	218	324
PPR_1	PPR repeat	2.9E-12	37	23.80	234	266
PPR	PPR repeat	1.8E-07	22	25.00	240	270
Vps23_core	Vps23 core domain	0.16	3	20.60	240	269
PPR_2	PPR repeat family	2.2E-13	41	30.00	250	286
Glyco_trans_4_3	Glycosyl transferase family 4 group	0.085	3	25.00	257	275
PPR_3	Pentatricopeptide repeat domain	6.8E-14	42	25.00	260	317
PPR_1	PPR repeat	2.1E-18	56	23.80	268	300
PPR_2	PPR repeat family	5E-21	65	30.00	272	321
Vps23_core	Vps23 core domain	0.36	1	20.60	272	301
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.059	3	25.90	275	368
PPR	PPR repeat	4.7E-11	33	25.00	275	305
Clathrin	Region in Clathrin and VPS	0.0046	7	23.60	278	369
TPR_19	Tetratricopeptide repeat	0.075	4	25.00	286	301
TPR_14	Tetratricopeptide repeat	0.88	1	23.50	287	299
PPR_1	PPR repeat	1.6E-11	34	23.80	304	335
PPR	PPR repeat	6.6E-07	20	25.00	310	340
PPR_2	PPR repeat family	4.1E-14	43	30.00	313	356
TPR_19	Tetratricopeptide repeat	1	1	25.00	320	337
PPR_long	Pentacotripeptide-repeat region of PRORP	4.2E-12	36	27.00	330	440
PPR_3	Pentatricopeptide repeat domain	2E-13	41	25.00	330	388
PPR_1	PPR repeat	5.4E-14	42	23.80	338	370
PPR_2	PPR repeat family	2.2E-17	54	30.00	342	391
PPR	PPR repeat	4.1E-09	27	25.00	345	375
Vps39_1	Vacuolar sorting protein 39 domain 1	0.52	1	21.40	347	378
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.72	1	27.20	350	374
DUF3368	Domain of unknown function (DUF3368)	0.36	1	27.30	356	374
PPR_1	PPR repeat	4.5E-12	36	23.80	374	406
PPR_2	PPR repeat family	4.3E-19	59	30.00	377	426
Vps23_core	Vps23 core domain	0.056	4	20.60	378	409
PPR	PPR repeat	1.4E-09	28	25.00	381	410
PPR_3	Pentatricopeptide repeat domain	2.5E-09	28	25.00	381	422
AEP1	ATPase expression protein 1	0.0037	7	27.00	382	441
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0038	7	28.10	385	407
MRP-S27	Mitochondrial 28S ribosomal protein S27	4E-05	13	25.90	385	440
ATP13	Mitochondrial ATPase expression	0.084	3	26.70	385	406
Clathrin	Region in Clathrin and VPS	0.027	5	23.60	388	441
TPR_7	Tetratricopeptide repeat	0.046	5	27.90	390	405
TPR_19	Tetratricopeptide repeat	0.0027	9	25.00	392	441
TPR_14	Tetratricopeptide repeat	0.013	7	23.50	394	422
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.011	6	27.20	395	445
PPR_long	Pentacotripeptide-repeat region of PRORP	1.6E-08	25	27.00	402	490
PPR_3	Pentatricopeptide repeat domain	3.1E-14	43	25.00	402	457
PPR_1	PPR repeat	3.7E-15	46	23.80	408	439
ATP13	Mitochondrial ATPase expression	0.0039	8	26.70	410	443
PPR_2	PPR repeat family	8.2E-19	58	30.00	412	461
PPR	PPR repeat	4.8E-11	33	25.00	415	445
Vps23_core	Vps23 core domain	0.037	5	20.60	415	440
TPR_7	Tetratricopeptide repeat	0.67	1	27.90	423	439
PPR_1	PPR repeat	1.3E-14	44	23.80	443	476
PPR_2	PPR repeat family	1E-16	51	30.00	450	495
PPR	PPR repeat	8.3E-11	32	25.00	450	479
Clathrin	Region in Clathrin and VPS	0.19	2	23.60	450	510
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.5	1	28.10	455	477
TPR_14	Tetratricopeptide repeat	0.15	4	23.50	459	482
TPR_19	Tetratricopeptide repeat	0.18	3	25.00	461	479
Glyco_trans_4_3	Glycosyl transferase family 4 group	0.13	2	25.00	462	492
PPR_long	Pentacotripeptide-repeat region of PRORP	4.6E-11	33	27.00	469	585
PPR_3	Pentatricopeptide repeat domain	7.4E-14	42	25.00	470	526
ATP13	Mitochondrial ATPase expression	0.71	0	26.70	477	510
PPR_1	PPR repeat	9.4E-13	38	23.80	478	509
Clathrin	Region in Clathrin and VPS	0.42	1	23.60	483	542
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0014	8	25.90	485	591
PPR	PPR repeat	1.6E-09	28	25.00	485	515
PPR_2	PPR repeat family	1.2E-12	38	30.00	490	531
TPR_14	Tetratricopeptide repeat	0.16	4	23.50	490	510
TPR_7	Tetratricopeptide repeat	0.2	3	27.90	494	509
PPR_1	PPR repeat	2E-09	28	23.80	513	545
PPR_2	PPR repeat family	3.2E-16	50	30.00	517	565
PPR	PPR repeat	5.5E-07	20	25.00	520	550
PPR_3	Pentatricopeptide repeat domain	0.00094	10	25.00	545	584
PPR_1	PPR repeat	5E-10	30	23.80	548	579
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0034	8	21.40	555	589
PPR	PPR repeat	1.5E-07	22	25.00	556	585
PPR_2	PPR repeat family	0.0085	7	30.00	561	585