c2pfam

AT2G25140.1 :

Domain Description Evalue Bits GA Start End
Clp_N Clp amino terminal domain 6.5E-16 50 20.70 99 150
Clp_N Clp amino terminal domain 9.2E-11 33 20.70 176 226
AAA_16 AAA ATPase domain 3.1E-07 22 32.60 261 306
Sigma54_activat Sigma-54 interaction domain 0.00012 13 20.20 264 364
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0091 7 20.30 269 306
IstB_IS21 IstB-like ATP binding protein 3.1E-05 15 24.10 278 344
AAA_7 P-loop containing dynein motor region 0.012 7 25.80 278 304
ResIII Type III restriction enzyme, res subunit 0.52 2 20.90 278 304
AAA_22 AAA domain 1.2E-05 17 27.00 279 365
RsgA_GTPase RsgA GTPase 0.09 4 30.00 280 303
PhoH PhoH-like protein 0.053 4 20.10 280 317
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.041 5 26.60 281 308
AAA_24 AAA domain 0.0039 8 27.00 282 309
Zeta_toxin Zeta toxin 0.046 4 20.10 283 304
AAA_2 AAA domain (Cdc48 subfamily) 0.00025 13 20.60 283 366
AAA_5 AAA domain (dynein-related subfamily) 8.5E-06 17 20.80 284 363
AAA_14 AAA domain 2E-05 16 27.00 284 366
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.012 7 20.00 284 304
AAA_23 AAA domain 0.22 3 27.00 284 300
ABC_tran ABC transporter 0.19 4 23.10 284 302
AAA_28 AAA domain 0.0032 9 27.00 284 311
NACHT NACHT domain 0.0004 12 20.40 284 311
Roc Ras of Complex, Roc, domain of DAPkinase 0.015 7 27.00 284 302
AAA_25 AAA domain 0.0038 8 27.00 284 357
MMR_HSR1 GTPase of unknown function 0.13 4 24.50 284 303
NTPase_1 NTPase 0.03 6 23.90 284 305
AAA_3 ATPase family associated with various cellular activities (AAA) 0.12 4 21.10 285 304
AAA_33 AAA domain 0.012 7 27.00 285 303
RNA_helicase RNA helicase 0.0068 8 21.50 285 305
AAA_18 AAA domain 0.0022 10 29.40 285 304
AAA ATPase family associated with various cellular activities (AAA) 9.9E-17 53 20.80 285 419
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.36 2 21.70 290 306
TniB Bacterial TniB protein 4E-05 14 20.10 309 417
AAA_16 AAA ATPase domain 0.58 2 32.60 330 362
ResIII Type III restriction enzyme, res subunit 0.95 1 20.90 343 367
AAA_lid_9 AAA lid domain 1.4E-36 116 22.80 423 525
AAA_23 AAA domain 0.018 7 27.00 506 601
Torsin Torsin 9.4E-05 14 20.90 643 710
AAA_16 AAA ATPase domain 0.0008 11 32.60 655 708
ResIII Type III restriction enzyme, res subunit 0.0015 10 20.90 658 713
Zeta_toxin Zeta toxin 0.00025 12 20.10 676 726
Sigma54_activat Sigma-54 interaction domain 1.4E-08 26 20.20 679 805
TniB Bacterial TniB protein 0.24 2 20.10 679 702
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.0063 8 20.00 680 705
AAA_2 AAA domain (Cdc48 subfamily) 0 187 20.60 681 850
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.002 10 27.00 681 713
T2SSE Type II/IV secretion system protein 0.00016 12 24.90 683 759
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0066 8 26.60 684 707
RsgA_GTPase RsgA GTPase 0.002 9 30.00 685 706
AAA_7 P-loop containing dynein motor region 0.00015 13 25.80 685 731
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00067 10 20.30 685 728
IstB_IS21 IstB-like ATP binding protein 0.00027 12 24.10 686 721
AAA_23 AAA domain 0.0016 10 27.00 686 888
AAA_5 AAA domain (dynein-related subfamily) 3.7E-15 48 20.80 686 807
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.0011 10 20.50 686 705
AAA_24 AAA domain 0.0024 9 27.00 686 769
RNA_helicase RNA helicase 0.0026 10 21.50 687 708
AAA_28 AAA domain 0.0054 8 27.00 687 706
AAA_33 AAA domain 0.0021 10 27.00 687 722
Roc Ras of Complex, Roc, domain of DAPkinase 0.0047 9 27.00 687 721
AAA_25 AAA domain 0.21 2 27.00 687 704
MMR_HSR1 GTPase of unknown function 0.038 5 24.50 687 711
AAA ATPase family associated with various cellular activities (AAA) 6.9E-13 41 20.80 687 815
AAA_22 AAA domain 0.00018 13 27.00 687 787
ABC_tran ABC transporter 0.00022 13 23.10 687 719
PhoH PhoH-like protein 0.038 5 20.10 687 708
AAA_18 AAA domain 0.00075 11 29.40 688 707
AAA_14 AAA domain 4.3E-05 15 27.00 688 783
NACHT NACHT domain 0.11 4 20.40 688 704
NTPase_1 NTPase 0.14 3 23.90 689 707
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.025 6 21.70 692 719
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.99 1 27.00 755 780
AAA_3 ATPase family associated with various cellular activities (AAA) 0.00073 11 21.10 756 804
Mg_chelatase Magnesium chelatase, subunit ChlI 0.21 2 20.30 757 805
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4E-26 82 21.40 857 937

964

Clp_N
Clp_N
AAA_16
Sigma54_activat
Mg_chelatase
IstB_IS21
AAA_7
ResIII
AAA_22
RsgA_GTPase
PhoH
TsaE
AAA_24
Zeta_toxin
AAA_2
AAA_5
AAA_14
RuvB_N
AAA_23
ABC_tran
AAA_28
NACHT
Roc
AAA_25
MMR_HSR1
NTPase_1
AAA_3
AAA_33
RNA_helicase
AAA_18
AAA
CbiA
TniB
AAA_16
ResIII
AAA_lid_9
AAA_23
Torsin
AAA_16
ResIII
Zeta_toxin
Sigma54_activat
TniB
RuvB_N
AAA_2
DNA_pol3_delta2
T2SSE
TsaE
RsgA_GTPase
AAA_7
Mg_chelatase
IstB_IS21
AAA_23
AAA_5
PduV-EutP
AAA_24
RNA_helicase
AAA_28
AAA_33
Roc
AAA_25
MMR_HSR1
AAA
AAA_22
ABC_tran
PhoH
AAA_18
AAA_14
NACHT
NTPase_1
CbiA
DNA_pol3_delta2
AAA_3
Mg_chelatase
ClpB_D2-small

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DNA_pol3_delta2

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

T2SSE

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

TsaE

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

CbiA
9742225 Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem J 1998;335:159-166.
9742226 Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. Biochem J 1998;335:167-173.
7635831 Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus. J Bacteriol 1995;177:4481-4487.
8501034 Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 1993;175:3303-3316.
10966576 The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins 2000;41:238-247.
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.

NTPase_1

Clp_N
10982797 Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains. J Biol Chem 2000;275:37565-37571.

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

AAA_24

AAA_23

AAA_22

AAA_18

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_lid_9

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

RsgA_GTPase

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

Domain	Description	Evalue	Bits	GA	Start	End
Clp_N	Clp amino terminal domain	6.5E-16	50	20.70	99	150
Clp_N	Clp amino terminal domain	9.2E-11	33	20.70	176	226
AAA_16	AAA ATPase domain	3.1E-07	22	32.60	261	306
Sigma54_activat	Sigma-54 interaction domain	0.00012	13	20.20	264	364
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0091	7	20.30	269	306
IstB_IS21	IstB-like ATP binding protein	3.1E-05	15	24.10	278	344
AAA_7	P-loop containing dynein motor region	0.012	7	25.80	278	304
ResIII	Type III restriction enzyme, res subunit	0.52	2	20.90	278	304
AAA_22	AAA domain	1.2E-05	17	27.00	279	365
RsgA_GTPase	RsgA GTPase	0.09	4	30.00	280	303
PhoH	PhoH-like protein	0.053	4	20.10	280	317
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.041	5	26.60	281	308
AAA_24	AAA domain	0.0039	8	27.00	282	309
Zeta_toxin	Zeta toxin	0.046	4	20.10	283	304
AAA_2	AAA domain (Cdc48 subfamily)	0.00025	13	20.60	283	366
AAA_5	AAA domain (dynein-related subfamily)	8.5E-06	17	20.80	284	363
AAA_14	AAA domain	2E-05	16	27.00	284	366
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.012	7	20.00	284	304
AAA_23	AAA domain	0.22	3	27.00	284	300
ABC_tran	ABC transporter	0.19	4	23.10	284	302
AAA_28	AAA domain	0.0032	9	27.00	284	311
NACHT	NACHT domain	0.0004	12	20.40	284	311
Roc	Ras of Complex, Roc, domain of DAPkinase	0.015	7	27.00	284	302
AAA_25	AAA domain	0.0038	8	27.00	284	357
MMR_HSR1	GTPase of unknown function	0.13	4	24.50	284	303
NTPase_1	NTPase	0.03	6	23.90	284	305
AAA_3	ATPase family associated with various cellular activities (AAA)	0.12	4	21.10	285	304
AAA_33	AAA domain	0.012	7	27.00	285	303
RNA_helicase	RNA helicase	0.0068	8	21.50	285	305
AAA_18	AAA domain	0.0022	10	29.40	285	304
AAA	ATPase family associated with various cellular activities (AAA)	9.9E-17	53	20.80	285	419
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.36	2	21.70	290	306
TniB	Bacterial TniB protein	4E-05	14	20.10	309	417
AAA_16	AAA ATPase domain	0.58	2	32.60	330	362
ResIII	Type III restriction enzyme, res subunit	0.95	1	20.90	343	367
AAA_lid_9	AAA lid domain	1.4E-36	116	22.80	423	525
AAA_23	AAA domain	0.018	7	27.00	506	601
Torsin	Torsin	9.4E-05	14	20.90	643	710
AAA_16	AAA ATPase domain	0.0008	11	32.60	655	708
ResIII	Type III restriction enzyme, res subunit	0.0015	10	20.90	658	713
Zeta_toxin	Zeta toxin	0.00025	12	20.10	676	726
Sigma54_activat	Sigma-54 interaction domain	1.4E-08	26	20.20	679	805
TniB	Bacterial TniB protein	0.24	2	20.10	679	702
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.0063	8	20.00	680	705
AAA_2	AAA domain (Cdc48 subfamily)	0	187	20.60	681	850
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.002	10	27.00	681	713
T2SSE	Type II/IV secretion system protein	0.00016	12	24.90	683	759
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0066	8	26.60	684	707
RsgA_GTPase	RsgA GTPase	0.002	9	30.00	685	706
AAA_7	P-loop containing dynein motor region	0.00015	13	25.80	685	731
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00067	10	20.30	685	728
IstB_IS21	IstB-like ATP binding protein	0.00027	12	24.10	686	721
AAA_23	AAA domain	0.0016	10	27.00	686	888
AAA_5	AAA domain (dynein-related subfamily)	3.7E-15	48	20.80	686	807
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.0011	10	20.50	686	705
AAA_24	AAA domain	0.0024	9	27.00	686	769
RNA_helicase	RNA helicase	0.0026	10	21.50	687	708
AAA_28	AAA domain	0.0054	8	27.00	687	706
AAA_33	AAA domain	0.0021	10	27.00	687	722
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0047	9	27.00	687	721
AAA_25	AAA domain	0.21	2	27.00	687	704
MMR_HSR1	GTPase of unknown function	0.038	5	24.50	687	711
AAA	ATPase family associated with various cellular activities (AAA)	6.9E-13	41	20.80	687	815
AAA_22	AAA domain	0.00018	13	27.00	687	787
ABC_tran	ABC transporter	0.00022	13	23.10	687	719
PhoH	PhoH-like protein	0.038	5	20.10	687	708
AAA_18	AAA domain	0.00075	11	29.40	688	707
AAA_14	AAA domain	4.3E-05	15	27.00	688	783
NACHT	NACHT domain	0.11	4	20.40	688	704
NTPase_1	NTPase	0.14	3	23.90	689	707
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.025	6	21.70	692	719
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.99	1	27.00	755	780
AAA_3	ATPase family associated with various cellular activities (AAA)	0.00073	11	21.10	756	804
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.21	2	20.30	757	805
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	4E-26	82	21.40	857	937