c2pfam

AT2G25530.1 :

Domain Description Evalue Bits GA Start End
Tipalpha TNF-alpha-Inducing protein of Helicobacter 0.0002 11 26.60 24 96
AAA_22 AAA domain 0.85 -1 27.00 36 77
AFG1_ATPase AFG1-like ATPase 0.36 -1 20.20 113 154
Caldesmon Caldesmon 2.6E-05 13 24.70 144 192
ATPase_2 ATPase domain predominantly from Archaea 1.6E-05 14 33.20 221 291
AFG1_ATPase AFG1-like ATPase 0 227 20.20 229 571
AAA_16 AAA ATPase domain 0.00014 12 32.60 235 265
AAA ATPase family associated with various cellular activities (AAA) 0.0008 9 20.80 244 265
ABC_tran ABC transporter 0.00018 12 23.10 244 289
AAA_22 AAA domain 0.00013 12 27.00 244 265
Bac_DnaA Bacterial dnaA protein 0.0037 7 20.40 244 259
NACHT NACHT domain 0.0032 7 20.40 245 261
Bac_DnaA Bacterial dnaA protein 0.0066 6 20.40 321 412
AAA ATPase family associated with various cellular activities (AAA) 0.28 1 20.80 354 401
NACHT NACHT domain 0.19 1 20.40 362 406
ATPase_2 ATPase domain predominantly from Archaea 0.0047 6 33.20 505 569
AFG1_ATPase AFG1-like ATPase 0.00055 8 20.20 615 641

655

Tipalpha
AAA_22
AFG1_ATPase
Caldesmon
ATPase_2
AFG1_ATPase
AAA_16
AAA
ABC_tran
AAA_22
Bac_DnaA
NACHT
Bac_DnaA
AAA
NACHT
ATPase_2
AFG1_ATPase

References:

AFG1_ATPase
1441755 AFG1, a new member of the SEC18-NSF, PAS1, CDC48-VCP, TBP family of ATPases. Yeast 1992;8:787-790.
8551518 Cloning, sequencing, and characterization of a complementary DNA from Haematobia irritans irritans (Diptera: Muscidae) that shares significant homology to a yeast ATPase. J Med Entomol 1995;32:906-910.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ATPase_2

Tipalpha

Caldesmon

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_22

Bac_DnaA

AAA_16

Domain	Description	Evalue	Bits	GA	Start	End
Tipalpha	TNF-alpha-Inducing protein of Helicobacter	0.0002	11	26.60	24	96
AAA_22	AAA domain	0.85	-1	27.00	36	77
AFG1_ATPase	AFG1-like ATPase	0.36	-1	20.20	113	154
Caldesmon	Caldesmon	2.6E-05	13	24.70	144	192
ATPase_2	ATPase domain predominantly from Archaea	1.6E-05	14	33.20	221	291
AFG1_ATPase	AFG1-like ATPase	0	227	20.20	229	571
AAA_16	AAA ATPase domain	0.00014	12	32.60	235	265
AAA	ATPase family associated with various cellular activities (AAA)	0.0008	9	20.80	244	265
ABC_tran	ABC transporter	0.00018	12	23.10	244	289
AAA_22	AAA domain	0.00013	12	27.00	244	265
Bac_DnaA	Bacterial dnaA protein	0.0037	7	20.40	244	259
NACHT	NACHT domain	0.0032	7	20.40	245	261
Bac_DnaA	Bacterial dnaA protein	0.0066	6	20.40	321	412
AAA	ATPase family associated with various cellular activities (AAA)	0.28	1	20.80	354	401
NACHT	NACHT domain	0.19	1	20.40	362	406
ATPase_2	ATPase domain predominantly from Archaea	0.0047	6	33.20	505	569
AFG1_ATPase	AFG1-like ATPase	0.00055	8	20.20	615	641