c2pfam

AT2G27600.1 :

Domain Description Evalue Bits GA Start End
ATPase_2 ATPase domain predominantly from Archaea 0.48 1 33.20 2 75
USP8_dimer USP8 dimerisation domain 0.00069 11 24.00 7 75
MIT MIT (microtubule interacting and transport) domain 7.2E-24 75 28.30 7 70
DUF815 Protein of unknown function (DUF815) 2E-06 18 20.10 122 232
AAA_16 AAA ATPase domain 7.5E-07 21 32.60 162 256
ATPase_2 ATPase domain predominantly from Archaea 0.0034 8 33.20 162 190
Parvo_NS1 Parvovirus non-structural protein NS1 0.00036 11 20.00 163 187
TIP49 TIP49 C-terminus 2.8E-06 18 23.80 164 216
AAA_2 AAA domain (Cdc48 subfamily) 8.8E-06 17 20.60 166 250
AAA_14 AAA domain 6.7E-06 17 27.00 167 236
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.6E-07 22 20.00 167 237
Torsin Torsin 0.00027 12 20.90 167 208
AAA_7 P-loop containing dynein motor region 0.00042 11 25.80 167 196
NACHT NACHT domain 0.0015 9 20.40 168 189
IstB_IS21 IstB-like ATP binding protein 6.3E-06 17 24.10 168 202
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00017 12 20.30 168 186
Sigma54_activat Sigma-54 interaction domain 0.0013 9 20.20 168 199
AAA_5 AAA domain (dynein-related subfamily) 1E-06 20 20.80 168 290
AAA_22 AAA domain 1.1E-05 17 27.00 168 195
AAA_24 AAA domain 5.5E-05 14 27.00 168 188
AAA_18 AAA domain 5.7E-05 15 29.40 169 204
AAA_33 AAA domain 1.3E-05 16 27.00 169 208
RNA_helicase RNA helicase 5.3E-05 15 21.50 169 193
AAA ATPase family associated with various cellular activities (AAA) 0 147 20.80 169 298
AAA_25 AAA domain 0.0015 9 27.00 169 186
PhoH PhoH-like protein 0.00031 11 20.10 170 189
AAA_17 AAA domain 4.4E-05 15 27.00 171 209
AAA_25 AAA domain 1 0 27.00 214 250
AAA_lid_3 AAA+ lid domain 1.1E-05 16 27.20 323 354
Vps4_C Vps4 C terminal oligomerisation domain 2.5E-26 82 21.30 368 432

435

ATPase_2
USP8_dimer
MIT
DUF815
AAA_16
ATPase_2
Parvo_NS1
TIP49
AAA_2
AAA_14
RuvB_N
Torsin
AAA_7
NACHT
IstB_IS21
Mg_chelatase
Sigma54_activat
AAA_5
AAA_22
AAA_24
AAA_18
AAA_33
RNA_helicase
AAA
AAA_25
PhoH
AAA_17
AAA_25
AAA_lid_3
Vps4_C

References:

USP8_dimer

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

MIT
11085978 Identification and characterization of SNX15, a novel sorting nexin involved in protein trafficking. J Biol Chem 2001;276:5074-5084.
16193069 Structural and mechanistic studies of VPS4 proteins. EMBO J. 2005;24:3658-3669.
16174732 Structure and ESCRT-III protein interactions of the MIT domain of human VPS4A. Proc Natl Acad Sci U S A. 2005;102:13813-13818.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

ATPase_2

DUF815

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

AAA_24

AAA_22

AAA_18

AAA_17

AAA_16

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_lid_3

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

AAA_14

Vps4_C
16704411 The beta domain is required for Vps4p oligomerization into a functionally active ATPase. FEBS J. 2006;273:2357-2373.

Parvo_NS1
8372437 Nuclear targeting of the parvoviral replicator molecule NS1: evidence for self-association prior to nuclear transport. Virology 1993;196:637-651.
9454701 Nonstructural protein-2 and the replication of canine parvovirus. Virology 1998;240:273-281.

Domain	Description	Evalue	Bits	GA	Start	End
ATPase_2	ATPase domain predominantly from Archaea	0.48	1	33.20	2	75
USP8_dimer	USP8 dimerisation domain	0.00069	11	24.00	7	75
MIT	MIT (microtubule interacting and transport) domain	7.2E-24	75	28.30	7	70
DUF815	Protein of unknown function (DUF815)	2E-06	18	20.10	122	232
AAA_16	AAA ATPase domain	7.5E-07	21	32.60	162	256
ATPase_2	ATPase domain predominantly from Archaea	0.0034	8	33.20	162	190
Parvo_NS1	Parvovirus non-structural protein NS1	0.00036	11	20.00	163	187
TIP49	TIP49 C-terminus	2.8E-06	18	23.80	164	216
AAA_2	AAA domain (Cdc48 subfamily)	8.8E-06	17	20.60	166	250
AAA_14	AAA domain	6.7E-06	17	27.00	167	236
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.6E-07	22	20.00	167	237
Torsin	Torsin	0.00027	12	20.90	167	208
AAA_7	P-loop containing dynein motor region	0.00042	11	25.80	167	196
NACHT	NACHT domain	0.0015	9	20.40	168	189
IstB_IS21	IstB-like ATP binding protein	6.3E-06	17	24.10	168	202
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00017	12	20.30	168	186
Sigma54_activat	Sigma-54 interaction domain	0.0013	9	20.20	168	199
AAA_5	AAA domain (dynein-related subfamily)	1E-06	20	20.80	168	290
AAA_22	AAA domain	1.1E-05	17	27.00	168	195
AAA_24	AAA domain	5.5E-05	14	27.00	168	188
AAA_18	AAA domain	5.7E-05	15	29.40	169	204
AAA_33	AAA domain	1.3E-05	16	27.00	169	208
RNA_helicase	RNA helicase	5.3E-05	15	21.50	169	193
AAA	ATPase family associated with various cellular activities (AAA)	0	147	20.80	169	298
AAA_25	AAA domain	0.0015	9	27.00	169	186
PhoH	PhoH-like protein	0.00031	11	20.10	170	189
AAA_17	AAA domain	4.4E-05	15	27.00	171	209
AAA_25	AAA domain	1	0	27.00	214	250
AAA_lid_3	AAA+ lid domain	1.1E-05	16	27.20	323	354
Vps4_C	Vps4 C terminal oligomerisation domain	2.5E-26	82	21.30	368	432