c2pfam

AT2G27610.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.00027 11 30.00 60 101
PPR PPR repeat 9.4E-05 13 25.00 60 88
PPR_1 PPR repeat 0.0039 7 23.80 60 81
PPR_2 PPR repeat family 0.00015 12 30.00 128 159
PPR PPR repeat 4E-05 14 25.00 132 159
PPR_3 Pentatricopeptide repeat domain 0.027 5 25.00 132 158
PPR_1 PPR repeat 0.28 1 23.80 134 155
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-05 14 27.00 139 255
PPR_3 Pentatricopeptide repeat domain 1.8E-09 28 25.00 151 204
PPR_1 PPR repeat 1.2E-06 18 23.80 157 185
PPR_2 PPR repeat family 2.6E-14 44 30.00 157 199
PPR PPR repeat 3.9E-10 30 25.00 160 189
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00037 10 27.00 206 257
PPR PPR repeat 2E-05 15 25.00 233 254
PPR_2 PPR repeat family 0.00067 10 30.00 233 253
PPR_1 PPR repeat 0.022 5 23.80 233 254
PPR_3 Pentatricopeptide repeat domain 0.47 1 25.00 233 270
TPR_19 Tetratricopeptide repeat 0.71 1 25.00 235 253
TPR_2 Tetratricopeptide repeat 0.26 2 22.40 237 254
PPR_2 PPR repeat family 9.6E-09 26 30.00 258 306
PPR_3 Pentatricopeptide repeat domain 0.014 6 25.00 259 306
PPR_1 PPR repeat 4.6E-05 13 23.80 259 286
PPR PPR repeat 1.7E-09 28 25.00 261 287
PPR_long Pentacotripeptide-repeat region of PRORP 0.0062 6 27.00 281 315
PPR PPR repeat 0.019 6 25.00 334 356
PPR_2 PPR repeat family 0.12 3 30.00 334 355
PPR_1 PPR repeat 1.1E-05 15 23.80 357 389
PPR_3 Pentatricopeptide repeat domain 3.1E-10 30 25.00 361 406
PPR_2 PPR repeat family 9.8E-20 61 30.00 361 407
PPR PPR repeat 2.1E-10 31 25.00 363 393
PPR_1 PPR repeat 0.0072 6 23.80 391 406
PPR_3 Pentatricopeptide repeat domain 0.067 4 25.00 432 452
PPR PPR repeat 9.1E-06 16 25.00 432 453
PPR_2 PPR repeat family 0.00056 10 30.00 432 452
PPR_1 PPR repeat 0.015 5 23.80 433 451
TPR_14 Tetratricopeptide repeat 0.12 4 23.50 433 452
TPR_19 Tetratricopeptide repeat 0.015 6 25.00 433 458
TPR_16 Tetratricopeptide repeat 0.025 6 32.70 433 451
TPR_8 Tetratricopeptide repeat 0.023 5 25.70 434 451
TPR_7 Tetratricopeptide repeat 0.19 2 27.90 436 451
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.19 2 27.20 436 452
TPR_2 Tetratricopeptide repeat 0.051 4 22.40 437 451
PPR_2 PPR repeat family 8.8E-15 45 30.00 457 505
PPR_1 PPR repeat 0.013 6 23.80 458 484
PPR_3 Pentatricopeptide repeat domain 1.2E-10 32 25.00 458 504
PPR PPR repeat 1.9E-07 21 25.00 460 490
TPR_14 Tetratricopeptide repeat 0.015 7 23.50 461 485
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-09 28 27.00 469 611
TPR_7 Tetratricopeptide repeat 0.76 1 27.90 469 484
TPR_8 Tetratricopeptide repeat 0.31 2 25.70 469 484
PPR_1 PPR repeat 0.0033 8 23.80 489 502
PPR PPR repeat 5.6E-05 14 25.00 534 555
PPR_2 PPR repeat family 0.012 6 30.00 535 554
PPR_1 PPR repeat 0.0075 6 23.80 535 554
PPR_3 Pentatricopeptide repeat domain 0.00091 10 25.00 535 559
TPR_14 Tetratricopeptide repeat 0.47 2 23.50 535 558
TPR_8 Tetratricopeptide repeat 0.019 6 25.70 538 555
DUF1216 Protein of unknown function (DUF1216) 0.76 0 19.70 538 592
TPR_7 Tetratricopeptide repeat 0.43 1 27.90 539 556
TPR_19 Tetratricopeptide repeat 0.35 2 25.00 539 560
TPR_2 Tetratricopeptide repeat 0.17 3 22.40 540 555
PPR_2 PPR repeat family 1.4E-15 48 30.00 559 606
PPR_3 Pentatricopeptide repeat domain 1.4E-06 19 25.00 560 594
PPR_1 PPR repeat 1.9E-08 24 23.80 560 588
PPR PPR repeat 1.9E-13 40 25.00 562 591
PPR_long Pentacotripeptide-repeat region of PRORP 8.2E-06 15 27.00 567 659
PPR PPR repeat 0.00042 11 25.00 597 625
PPR_2 PPR repeat family 0.41 1 30.00 604 630
DUF1216 Protein of unknown function (DUF1216) 0.0008 10 19.70 619 657
PPR PPR repeat 1.2E-05 16 25.00 636 658
PPR_1 PPR repeat 0.00079 9 23.80 636 658
PPR_2 PPR repeat family 0.0013 9 30.00 637 659
TPR_14 Tetratricopeptide repeat 0.033 6 23.50 637 656
TPR_19 Tetratricopeptide repeat 0.02 6 25.00 638 672
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.13 3 27.20 640 674
TPR_7 Tetratricopeptide repeat 0.38 1 27.90 640 656
TPR_8 Tetratricopeptide repeat 0.11 3 25.70 640 656
PPR_3 Pentatricopeptide repeat domain 0.6 1 25.00 640 658
TPR_2 Tetratricopeptide repeat 0.89 0 22.40 641 655
TPR_16 Tetratricopeptide repeat 0.027 5 32.70 684 716
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.057 4 27.20 686 716
TPR_17 Tetratricopeptide repeat 0.00053 11 24.40 687 716
TPR_19 Tetratricopeptide repeat 0.051 4 25.00 688 716
TPR_2 Tetratricopeptide repeat 0.15 3 22.40 699 716
TPR_7 Tetratricopeptide repeat 0.21 2 27.90 700 716
DYW_deaminase DYW family of nucleic acid deaminases 0 150 31.60 733 856
RTP Replication terminator protein 0.00052 11 21.00 762 801

868

PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_long
PPR_3
PPR_1
PPR_2
PPR
RRM_5
PPR
PPR_2
PPR_1
PPR_3
TPR_19
TPR_2
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR
PPR_2
PPR_1
TPR_14
TPR_19
TPR_16
TPR_8
TPR_7
ANAPC3
TPR_2
PPR_2
PPR_1
PPR_3
PPR
TPR_14
PPR_long
TPR_7
TPR_8
PPR_1
PPR
PPR_2
PPR_1
PPR_3
TPR_14
TPR_8
DUF1216
TPR_7
TPR_19
TPR_2
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR
PPR_2
DUF1216
PPR
PPR_1
PPR_2
TPR_14
TPR_19
ANAPC3
TPR_7
TPR_8
PPR_3
TPR_2
TPR_16
ANAPC3
TPR_17
TPR_19
TPR_2
TPR_7
DYW_deaminase
RTP

References:

TPR_7

RTP
8670817 The structure and function of the replication terminator protein of Bacillus subtilis: identification of the 'winged helix' DNA-binding domain. EMBO J 1996;15:3164-3173.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_16

ANAPC3

DUF1216

RRM_5

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_14

DYW_deaminase

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.00027	11	30.00	60	101
PPR	PPR repeat	9.4E-05	13	25.00	60	88
PPR_1	PPR repeat	0.0039	7	23.80	60	81
PPR_2	PPR repeat family	0.00015	12	30.00	128	159
PPR	PPR repeat	4E-05	14	25.00	132	159
PPR_3	Pentatricopeptide repeat domain	0.027	5	25.00	132	158
PPR_1	PPR repeat	0.28	1	23.80	134	155
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-05	14	27.00	139	255
PPR_3	Pentatricopeptide repeat domain	1.8E-09	28	25.00	151	204
PPR_1	PPR repeat	1.2E-06	18	23.80	157	185
PPR_2	PPR repeat family	2.6E-14	44	30.00	157	199
PPR	PPR repeat	3.9E-10	30	25.00	160	189
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.00037	10	27.00	206	257
PPR	PPR repeat	2E-05	15	25.00	233	254
PPR_2	PPR repeat family	0.00067	10	30.00	233	253
PPR_1	PPR repeat	0.022	5	23.80	233	254
PPR_3	Pentatricopeptide repeat domain	0.47	1	25.00	233	270
TPR_19	Tetratricopeptide repeat	0.71	1	25.00	235	253
TPR_2	Tetratricopeptide repeat	0.26	2	22.40	237	254
PPR_2	PPR repeat family	9.6E-09	26	30.00	258	306
PPR_3	Pentatricopeptide repeat domain	0.014	6	25.00	259	306
PPR_1	PPR repeat	4.6E-05	13	23.80	259	286
PPR	PPR repeat	1.7E-09	28	25.00	261	287
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0062	6	27.00	281	315
PPR	PPR repeat	0.019	6	25.00	334	356
PPR_2	PPR repeat family	0.12	3	30.00	334	355
PPR_1	PPR repeat	1.1E-05	15	23.80	357	389
PPR_3	Pentatricopeptide repeat domain	3.1E-10	30	25.00	361	406
PPR_2	PPR repeat family	9.8E-20	61	30.00	361	407
PPR	PPR repeat	2.1E-10	31	25.00	363	393
PPR_1	PPR repeat	0.0072	6	23.80	391	406
PPR_3	Pentatricopeptide repeat domain	0.067	4	25.00	432	452
PPR	PPR repeat	9.1E-06	16	25.00	432	453
PPR_2	PPR repeat family	0.00056	10	30.00	432	452
PPR_1	PPR repeat	0.015	5	23.80	433	451
TPR_14	Tetratricopeptide repeat	0.12	4	23.50	433	452
TPR_19	Tetratricopeptide repeat	0.015	6	25.00	433	458
TPR_16	Tetratricopeptide repeat	0.025	6	32.70	433	451
TPR_8	Tetratricopeptide repeat	0.023	5	25.70	434	451
TPR_7	Tetratricopeptide repeat	0.19	2	27.90	436	451
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.19	2	27.20	436	452
TPR_2	Tetratricopeptide repeat	0.051	4	22.40	437	451
PPR_2	PPR repeat family	8.8E-15	45	30.00	457	505
PPR_1	PPR repeat	0.013	6	23.80	458	484
PPR_3	Pentatricopeptide repeat domain	1.2E-10	32	25.00	458	504
PPR	PPR repeat	1.9E-07	21	25.00	460	490
TPR_14	Tetratricopeptide repeat	0.015	7	23.50	461	485
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-09	28	27.00	469	611
TPR_7	Tetratricopeptide repeat	0.76	1	27.90	469	484
TPR_8	Tetratricopeptide repeat	0.31	2	25.70	469	484
PPR_1	PPR repeat	0.0033	8	23.80	489	502
PPR	PPR repeat	5.6E-05	14	25.00	534	555
PPR_2	PPR repeat family	0.012	6	30.00	535	554
PPR_1	PPR repeat	0.0075	6	23.80	535	554
PPR_3	Pentatricopeptide repeat domain	0.00091	10	25.00	535	559
TPR_14	Tetratricopeptide repeat	0.47	2	23.50	535	558
TPR_8	Tetratricopeptide repeat	0.019	6	25.70	538	555
DUF1216	Protein of unknown function (DUF1216)	0.76	0	19.70	538	592
TPR_7	Tetratricopeptide repeat	0.43	1	27.90	539	556
TPR_19	Tetratricopeptide repeat	0.35	2	25.00	539	560
TPR_2	Tetratricopeptide repeat	0.17	3	22.40	540	555
PPR_2	PPR repeat family	1.4E-15	48	30.00	559	606
PPR_3	Pentatricopeptide repeat domain	1.4E-06	19	25.00	560	594
PPR_1	PPR repeat	1.9E-08	24	23.80	560	588
PPR	PPR repeat	1.9E-13	40	25.00	562	591
PPR_long	Pentacotripeptide-repeat region of PRORP	8.2E-06	15	27.00	567	659
PPR	PPR repeat	0.00042	11	25.00	597	625
PPR_2	PPR repeat family	0.41	1	30.00	604	630
DUF1216	Protein of unknown function (DUF1216)	0.0008	10	19.70	619	657
PPR	PPR repeat	1.2E-05	16	25.00	636	658
PPR_1	PPR repeat	0.00079	9	23.80	636	658
PPR_2	PPR repeat family	0.0013	9	30.00	637	659
TPR_14	Tetratricopeptide repeat	0.033	6	23.50	637	656
TPR_19	Tetratricopeptide repeat	0.02	6	25.00	638	672
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.13	3	27.20	640	674
TPR_7	Tetratricopeptide repeat	0.38	1	27.90	640	656
TPR_8	Tetratricopeptide repeat	0.11	3	25.70	640	656
PPR_3	Pentatricopeptide repeat domain	0.6	1	25.00	640	658
TPR_2	Tetratricopeptide repeat	0.89	0	22.40	641	655
TPR_16	Tetratricopeptide repeat	0.027	5	32.70	684	716
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.057	4	27.20	686	716
TPR_17	Tetratricopeptide repeat	0.00053	11	24.40	687	716
TPR_19	Tetratricopeptide repeat	0.051	4	25.00	688	716
TPR_2	Tetratricopeptide repeat	0.15	3	22.40	699	716
TPR_7	Tetratricopeptide repeat	0.21	2	27.90	700	716
DYW_deaminase	DYW family of nucleic acid deaminases	0	150	31.60	733	856
RTP	Replication terminator protein	0.00052	11	21.00	762	801