c2pfam

AT2G27740.1 :

Domain Description Evalue Bits GA Start End
Transcrip_act Transcriptional activator 0 237 27.50 20 170
Mis14 Kinetochore protein Mis14 like 0.00011 13 21.20 22 132
Exonuc_VII_L Exonuclease VII, large subunit 0.00033 11 21.70 34 134
OmpH Outer membrane protein (OmpH-like) 0.032 5 28.70 34 100
Spc7 Spc7 kinetochore protein 0.00027 10 34.00 43 167
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 9.3E-06 16 41.00 47 114
DUF4294 Domain of unknown function (DUF4294) 8.3E-05 13 27.00 48 104
Mrr_N Mrr N-terminal domain 0.0021 9 29.50 48 81
Syntaxin Syntaxin 0.57 0 25.00 50 64
DUF4407 Domain of unknown function (DUF4407) 0.00046 10 31.30 52 144
KxDL Uncharacterized conserved protein 0.0034 8 23.80 52 95
ISG65-75 Invariant surface glycoprotein 0.0017 8 20.60 53 135
DUF1664 Protein of unknown function (DUF1664) 0.0008 10 30.00 54 115
MCD_N Malonyl-CoA decarboxylase N-terminal domain 0.00061 11 22.40 57 113
V_ATPase_I V-type ATPase 116kDa subunit family 0.0014 7 26.50 58 146
TMPIT TMPIT-like protein 4.2E-05 13 22.10 65 139
Syntaxin Syntaxin 0.00015 12 25.00 69 170
IFT57 Intra-flagellar transport protein 57 4.5E-06 16 40.00 72 158
Phage_Mu_Gam Bacteriophage Mu Gam like protein 4.5E-07 20 22.10 73 140
KxDL Uncharacterized conserved protein 0.0037 8 23.80 73 113
DUF5660 Domain of unknown function (DUF5660) 0.052 4 24.00 74 94
DUF4208 Domain of unknown function (DUF4208) 1.5E-05 16 28.30 75 158
OmpH Outer membrane protein (OmpH-like) 0.00015 13 28.70 81 164
Lipoprotein_6 Lipoprotein 3.8E-05 14 24.50 82 170
KxDL Uncharacterized conserved protein 0.12 3 23.80 95 113
DUF5660 Domain of unknown function (DUF5660) 0.0013 10 24.00 96 140
DUF1664 Protein of unknown function (DUF1664) 0.13 3 30.00 103 154
DUF4294 Domain of unknown function (DUF4294) 0.53 1 27.00 114 143
MCD_N Malonyl-CoA decarboxylase N-terminal domain 0.24 2 22.40 124 147
Mrr_N Mrr N-terminal domain 0.36 2 29.50 126 168
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 0.37 1 41.00 130 168

174

Transcrip_act
Mis14
Exonuc_VII_L
OmpH
Spc7
Phasin
DUF4294
Mrr_N
Syntaxin
DUF4407
KxDL
ISG65-75
DUF1664
MCD_N
V_ATPase_I
TMPIT
Syntaxin
IFT57
Phage_Mu_Gam
KxDL
DUF5660
DUF4208
OmpH
Lipoprotein_6
KxDL
DUF5660
DUF1664
DUF4294
MCD_N
Mrr_N
Phasin

References:

V_ATPase_I
10224039 Structure and properties of the vacuolar (H+)-ATPases. J Biol Chem 1999;274:12951-12954.
10340849 Structure and properties of the clathrin-coated vesicle and yeast vacuolar V-ATPases. J Bioenerg Biomembr 1999;31:57-65.

DUF4294

DUF1664

Syntaxin
11839791 Characterization of temperature-sensitive mutations in the yeast syntaxin 1 homologues Sso1p and Sso2p, and evidence of a distinct function for Sso1p in sporulation. J Cell Sci 2002;115:409-420.
11157748 t-SNARE dephosphorylation promotes SNARE assembly and exocytosis in yeast. EMBO J 2001;20:411-421.
11224573 Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:258-264.
11224554 The taming of the SNARE. Nat Struct Biol 2001;8:186-188.
12072456 Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae. Genetics 2002;161:585-594.
11737951 The syntaxins. Genome Biol 2001;2:REVIEWS3012.

Lipoprotein_6
9403685 Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature. 1997;390:580-586.

Phasin
12099824 Isolation and characterization of polyhydroxyalkanoates inclusions and their associated proteins in Pseudomonas sp. 61-3. Biomacromolecules 2002;3:787-792.

DUF4208

DUF4407

Mrr_N

Mis14
15369671 Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres. Cell. 2004;118:715-729.
16563186 Phylogenetic and structural analysis of centromeric DNA and kinetochore proteins. Genome Biol. 2006;7:R23.

MCD_N

Phage_Mu_Gam
2945162 Purification of the gam gene-product of bacteriophage Mu and determination of the nucleotide sequence of the gam gene. Nucleic Acids Res 1986;14:6901-6914.

OmpH
2318304 Bacterial 'histone-like protein I' (HLP-I) is an outer membrane constituent? FEBS Lett 1990;262:123-126.
15304217 Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation. Mol Cell 2004;15:367-374.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

ISG65-75
1587856 Molecular characterization of two invariant surface glycoproteins specific for the bloodstream stage of Trypanosoma brucei. J Biol Chem. 1992;267:10797-10803.
18538880 Heterologous expression, purification and characterisation of the extracellular domain of trypanosome invariant surface glycoprotein ISG75. J Biotechnol. 2008;135:247-254.

KxDL

TMPIT

IFT57
15955805 Characterization of the intraflagellar transport complex B core: direct interaction of the IFT81 and IFT74/72 subunits. J Biol Chem. 2005;280:27688-27696.

DUF5660

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

Transcrip_act

Domain	Description	Evalue	Bits	GA	Start	End
Transcrip_act	Transcriptional activator	0	237	27.50	20	170
Mis14	Kinetochore protein Mis14 like	0.00011	13	21.20	22	132
Exonuc_VII_L	Exonuclease VII, large subunit	0.00033	11	21.70	34	134
OmpH	Outer membrane protein (OmpH-like)	0.032	5	28.70	34	100
Spc7	Spc7 kinetochore protein	0.00027	10	34.00	43	167
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	9.3E-06	16	41.00	47	114
DUF4294	Domain of unknown function (DUF4294)	8.3E-05	13	27.00	48	104
Mrr_N	Mrr N-terminal domain	0.0021	9	29.50	48	81
Syntaxin	Syntaxin	0.57	0	25.00	50	64
DUF4407	Domain of unknown function (DUF4407)	0.00046	10	31.30	52	144
KxDL	Uncharacterized conserved protein	0.0034	8	23.80	52	95
ISG65-75	Invariant surface glycoprotein	0.0017	8	20.60	53	135
DUF1664	Protein of unknown function (DUF1664)	0.0008	10	30.00	54	115
MCD_N	Malonyl-CoA decarboxylase N-terminal domain	0.00061	11	22.40	57	113
V_ATPase_I	V-type ATPase 116kDa subunit family	0.0014	7	26.50	58	146
TMPIT	TMPIT-like protein	4.2E-05	13	22.10	65	139
Syntaxin	Syntaxin	0.00015	12	25.00	69	170
IFT57	Intra-flagellar transport protein 57	4.5E-06	16	40.00	72	158
Phage_Mu_Gam	Bacteriophage Mu Gam like protein	4.5E-07	20	22.10	73	140
KxDL	Uncharacterized conserved protein	0.0037	8	23.80	73	113
DUF5660	Domain of unknown function (DUF5660)	0.052	4	24.00	74	94
DUF4208	Domain of unknown function (DUF4208)	1.5E-05	16	28.30	75	158
OmpH	Outer membrane protein (OmpH-like)	0.00015	13	28.70	81	164
Lipoprotein_6	Lipoprotein	3.8E-05	14	24.50	82	170
KxDL	Uncharacterized conserved protein	0.12	3	23.80	95	113
DUF5660	Domain of unknown function (DUF5660)	0.0013	10	24.00	96	140
DUF1664	Protein of unknown function (DUF1664)	0.13	3	30.00	103	154
DUF4294	Domain of unknown function (DUF4294)	0.53	1	27.00	114	143
MCD_N	Malonyl-CoA decarboxylase N-terminal domain	0.24	2	22.40	124	147
Mrr_N	Mrr N-terminal domain	0.36	2	29.50	126	168
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	0.37	1	41.00	130	168