c2pfam

AT2G27760.1 :

Domain Description Evalue Bits GA Start End
Adeno_IVa2 Adenovirus IVa2 protein 4.2E-05 13 20.10 8 42
AAA_29 P-loop containing region of AAA domain 0.00034 11 27.00 15 36
PhoH PhoH-like protein 2.1E-05 14 20.10 17 42
AAA_22 AAA domain 7.2E-06 17 27.00 18 58
IstB_IS21 IstB-like ATP binding protein 6.4E-06 16 24.10 18 74
RsgA_GTPase RsgA GTPase 0.00017 12 30.00 19 48
ABC_tran ABC transporter 7.1E-05 14 23.10 19 43
AAA_25 AAA domain 9.6E-05 12 27.00 19 43
IPT Isopentenyl transferase 4.6E-08 23 20.00 21 75
AAA_33 AAA domain 8.7E-06 16 27.00 22 63
AAA_18 AAA domain 5E-05 14 29.40 23 53
RNA_helicase RNA helicase 0.00041 11 21.50 23 58
AAA ATPase family associated with various cellular activities (AAA) 0.00037 11 20.80 23 58
Cytidylate_kin Cytidylate kinase 8.4E-06 16 20.40 24 73
IPPT IPP transferase 0 182 23.60 55 347
Cas9-BH Bridge helix of CRISPR-associated endonuclease Cas9 0.0004 10 26.30 338 358
DUF3449 Domain of unknown function (DUF3449) 9.1E-07 19 49.60 412 445
zf-met Zinc-finger of C2H2 type 0.00046 11 21.20 417 442
Cas9-BH Bridge helix of CRISPR-associated endonuclease Cas9 0.35 1 26.30 440 450

466

Adeno_IVa2
AAA_29
PhoH
AAA_22
IstB_IS21
RsgA_GTPase
ABC_tran
AAA_25
IPT
AAA_33
AAA_18
RNA_helicase
AAA
Cytidylate_kin
IPPT
Cas9-BH
DUF3449
zf-met
Cas9-BH

References:

IstB_IS21

zf-met

Cas9-BH

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

RsgA_GTPase

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

DUF3449

Adeno_IVa2
10684284 Interaction of the adenovirus IVa2 protein with viral packaging sequences. J Virol 2000;74:2687-2693.
8207818 The product of the adenovirus intermediate gene IVa2 is a transcriptional activator of the major late promoter. J Virol 1994;68:4450-4457.

AAA_33

AAA_29

AAA_25

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

IPPT
9294434 The modified nucleoside 2-methylthio-N6-isopentenyladenosine in tRNA of Shigella flexneri is required for expression of virulence genes. J Bacteriol 1997;179:5777-5782.
8139535 Subcellular locations of MOD5 proteins: mapping of sequences sufficient for targeting to mitochondria and demonstration that mitochondrial and nuclear isoforms commingle in the cytosol. Mol Cell Biol 1994;14:2298-2306.
1850093 MOD5 translation initiation sites determine N6-isopentenyladenosine modification of mitochondrial and cytoplasmic tRNA. Mol Cell Biol 1991;11:2382-2390.

IPT
1465104 Organization and functional analysis of three T-DNAs from the vitopine Ti plasmid pTiS4. Mol Gen Genet 1992;235:292-303.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
Adeno_IVa2	Adenovirus IVa2 protein	4.2E-05	13	20.10	8	42
AAA_29	P-loop containing region of AAA domain	0.00034	11	27.00	15	36
PhoH	PhoH-like protein	2.1E-05	14	20.10	17	42
AAA_22	AAA domain	7.2E-06	17	27.00	18	58
IstB_IS21	IstB-like ATP binding protein	6.4E-06	16	24.10	18	74
RsgA_GTPase	RsgA GTPase	0.00017	12	30.00	19	48
ABC_tran	ABC transporter	7.1E-05	14	23.10	19	43
AAA_25	AAA domain	9.6E-05	12	27.00	19	43
IPT	Isopentenyl transferase	4.6E-08	23	20.00	21	75
AAA_33	AAA domain	8.7E-06	16	27.00	22	63
AAA_18	AAA domain	5E-05	14	29.40	23	53
RNA_helicase	RNA helicase	0.00041	11	21.50	23	58
AAA	ATPase family associated with various cellular activities (AAA)	0.00037	11	20.80	23	58
Cytidylate_kin	Cytidylate kinase	8.4E-06	16	20.40	24	73
IPPT	IPP transferase	0	182	23.60	55	347
Cas9-BH	Bridge helix of CRISPR-associated endonuclease Cas9	0.0004	10	26.30	338	358
DUF3449	Domain of unknown function (DUF3449)	9.1E-07	19	49.60	412	445
zf-met	Zinc-finger of C2H2 type	0.00046	11	21.20	417	442
Cas9-BH	Bridge helix of CRISPR-associated endonuclease Cas9	0.35	1	26.30	440	450