c2pfam

AT2G28290.1 :

Domain Description Evalue Bits GA Start End
DFF40 DNA fragmentation factor 40 kDa 0.0021 7 25.00 557 654
ResIII Type III restriction enzyme, res subunit 5.7E-14 42 20.90 753 915
SNF2_N SNF2 family N-terminal domain 0 233 20.10 766 1048
DEAD DEAD/DEAH box helicase 1.4E-06 17 20.60 776 892
DEAD_2 DEAD_2 4.7E-06 16 20.60 830 895
Helicase_C Helicase conserved C-terminal domain 1.7E-18 56 20.90 1074 1187
SnAC Snf2-ATP coupling, chromatin remodelling complex 7.8E-24 74 27.00 1281 1378
Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase 0.072 2 20.80 2202 2247
HOOK_N HOOK domain 0.14 1 23.50 2225 2244
Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase 0.008 5 20.80 2271 2309
HOOK_N HOOK domain 0.069 2 23.50 2275 2299
Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase 0.2 1 20.80 2335 2369
HOOK_N HOOK domain 0.18 1 23.50 2339 2358
Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase 0.0068 6 20.80 2393 2428
HOOK_N HOOK domain 0.29 0 23.50 2398 2417
Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase 0.025 4 20.80 2451 2484
HOOK_N HOOK domain 0.0036 6 23.50 2456 2485

3574

DFF40
ResIII
SNF2_N
DEAD
DEAD_2
Helicase_C
SnAC
Thr_dehydrat_C
HOOK_N
Thr_dehydrat_C
HOOK_N
Thr_dehydrat_C
HOOK_N
Thr_dehydrat_C
HOOK_N
Thr_dehydrat_C
HOOK_N

References:

SNF2_N

DEAD_2
10915862 Nucleotide excision repair in yeast. Mutat Res 2000;451:13-24.

ResIII

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

Helicase_C

DFF40
15149602 Structural mechanism for inactivation and activation of CAD/DFF40 in the apoptotic pathway. Mol Cell. 2004;14:531-539.

Thr_dehydrat_C
9562556 Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase. Structure 1998;6:465-475.

SnAC

HOOK_N

Domain	Description	Evalue	Bits	GA	Start	End
DFF40	DNA fragmentation factor 40 kDa	0.0021	7	25.00	557	654
ResIII	Type III restriction enzyme, res subunit	5.7E-14	42	20.90	753	915
SNF2_N	SNF2 family N-terminal domain	0	233	20.10	766	1048
DEAD	DEAD/DEAH box helicase	1.4E-06	17	20.60	776	892
DEAD_2	DEAD_2	4.7E-06	16	20.60	830	895
Helicase_C	Helicase conserved C-terminal domain	1.7E-18	56	20.90	1074	1187
SnAC	Snf2-ATP coupling, chromatin remodelling complex	7.8E-24	74	27.00	1281	1378
Thr_dehydrat_C	C-terminal regulatory domain of Threonine dehydratase	0.072	2	20.80	2202	2247
HOOK_N	HOOK domain	0.14	1	23.50	2225	2244
Thr_dehydrat_C	C-terminal regulatory domain of Threonine dehydratase	0.008	5	20.80	2271	2309
HOOK_N	HOOK domain	0.069	2	23.50	2275	2299
Thr_dehydrat_C	C-terminal regulatory domain of Threonine dehydratase	0.2	1	20.80	2335	2369
HOOK_N	HOOK domain	0.18	1	23.50	2339	2358
Thr_dehydrat_C	C-terminal regulatory domain of Threonine dehydratase	0.0068	6	20.80	2393	2428
HOOK_N	HOOK domain	0.29	0	23.50	2398	2417
Thr_dehydrat_C	C-terminal regulatory domain of Threonine dehydratase	0.025	4	20.80	2451	2484
HOOK_N	HOOK domain	0.0036	6	23.50	2456	2485