c2pfam

AT2G29190.1 :

Domain Description Evalue Bits GA Start End
NABP Nucleic acid binding protein NABP 0.6 -2 20.00 150 178
NABP Nucleic acid binding protein NABP 1.5E-29 92 20.00 277 370
NABP Nucleic acid binding protein NABP 0 272 20.00 369 633
CPL CPL (NUC119) domain 0.025 3 20.70 634 671
PUF Pumilio-family RNA binding repeat 3E-14 41 21.20 638 672
PUF Pumilio-family RNA binding repeat 2.4E-11 32 21.20 674 707
PUF Pumilio-family RNA binding repeat 1.1E-12 36 21.20 710 743
DUF445 Protein of unknown function (DUF445) 1.9E-06 16 33.80 724 932
PUF Pumilio-family RNA binding repeat 1.8E-09 26 21.20 752 776
CPL CPL (NUC119) domain 0.0026 7 20.70 775 823
PUF Pumilio-family RNA binding repeat 1.4E-18 55 21.20 782 817
CPL CPL (NUC119) domain 0.017 4 20.70 812 856
PUF Pumilio-family RNA binding repeat 3.2E-14 41 21.20 822 852
DUF4258 Domain of unknown function (DUF4258) 0.39 0 25.60 823 842
PUF Pumilio-family RNA binding repeat 4.2E-11 31 21.20 856 889
DUF4258 Domain of unknown function (DUF4258) 0.00031 10 25.60 858 914
CPL CPL (NUC119) domain 0.019 4 20.70 898 926
PUF Pumilio-family RNA binding repeat 9.1E-12 33 21.20 901 928

972

NABP
NABP
NABP
CPL
PUF
PUF
PUF
DUF445
PUF
CPL
PUF
CPL
PUF
DUF4258
PUF
DUF4258
CPL
PUF

References:

DUF445

NABP
15488989 A cDNA homologue of Schizosaccharomyces pombe cdc5(+) from the mushroom Lentinula edodes: characterization of the cDNA and its expressed product. Biochim Biophys Acta 2004;1680:93-102.

CPL
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

DUF4258

PUF
9393998 A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line. Nature 1997;390:477-484.
9404893 The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA 1997;3:1421-1433.
11336677 Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell 2001;105:281-289.
11336708 Crystal structure of a Pumilio homology domain. Mol Cell 2001;7:855-865.

Domain	Description	Evalue	Bits	GA	Start	End
NABP	Nucleic acid binding protein NABP	0.6	-2	20.00	150	178
NABP	Nucleic acid binding protein NABP	1.5E-29	92	20.00	277	370
NABP	Nucleic acid binding protein NABP	0	272	20.00	369	633
CPL	CPL (NUC119) domain	0.025	3	20.70	634	671
PUF	Pumilio-family RNA binding repeat	3E-14	41	21.20	638	672
PUF	Pumilio-family RNA binding repeat	2.4E-11	32	21.20	674	707
PUF	Pumilio-family RNA binding repeat	1.1E-12	36	21.20	710	743
DUF445	Protein of unknown function (DUF445)	1.9E-06	16	33.80	724	932
PUF	Pumilio-family RNA binding repeat	1.8E-09	26	21.20	752	776
CPL	CPL (NUC119) domain	0.0026	7	20.70	775	823
PUF	Pumilio-family RNA binding repeat	1.4E-18	55	21.20	782	817
CPL	CPL (NUC119) domain	0.017	4	20.70	812	856
PUF	Pumilio-family RNA binding repeat	3.2E-14	41	21.20	822	852
DUF4258	Domain of unknown function (DUF4258)	0.39	0	25.60	823	842
PUF	Pumilio-family RNA binding repeat	4.2E-11	31	21.20	856	889
DUF4258	Domain of unknown function (DUF4258)	0.00031	10	25.60	858	914
CPL	CPL (NUC119) domain	0.019	4	20.70	898	926
PUF	Pumilio-family RNA binding repeat	9.1E-12	33	21.20	901	928