c2pfam

AT1G10330.1 :

Domain Description Evalue Bits GA Start End
ATP13 Mitochondrial ATPase expression 0.77 -1 26.70 4 29
PPR_1 PPR repeat 0.017 5 23.80 52 61
PPR_2 PPR repeat family 6.8E-12 35 30.00 52 98
TPR_12 Tetratricopeptide repeat 0.23 2 30.10 52 77
PPR PPR repeat 4.5E-05 13 25.00 53 79
PPR_3 Pentatricopeptide repeat domain 1.9E-07 21 25.00 54 95
RPN7 26S proteasome subunit RPN7 0.45 0 25.30 54 85
TPR_14 Tetratricopeptide repeat 0.44 2 23.50 56 79
TPR_7 Tetratricopeptide repeat 0.0017 8 27.90 59 86
PPR_long Pentacotripeptide-repeat region of PRORP 0.0046 6 27.00 67 97
PPR_1 PPR repeat 0.013 5 23.80 82 98
RPN7 26S proteasome subunit RPN7 0.029 4 25.30 126 154
PPR PPR repeat 0.092 3 25.00 126 147
PPR_3 Pentatricopeptide repeat domain 5.8E-05 13 25.00 143 178
PPR_2 PPR repeat family 4.2E-07 20 30.00 150 178
PPR PPR repeat 1.1E-08 25 25.00 153 178
PPR_1 PPR repeat 5.9E-05 12 23.80 156 178
PPR_long Pentacotripeptide-repeat region of PRORP 0.0049 6 27.00 159 233
TPR_1 Tetratricopeptide repeat 0.24 1 20.40 162 177
PPR_1 PPR repeat 8.4E-08 22 23.80 182 209
PPR_2 PPR repeat family 3.8E-12 36 30.00 182 233
PPR_3 Pentatricopeptide repeat domain 0.00017 11 25.00 182 232
PPR PPR repeat 4E-10 29 25.00 184 212
ATP13 Mitochondrial ATPase expression 0.075 3 26.70 257 285
PPR_1 PPR repeat 0.0039 7 23.80 262 284
RPN7 26S proteasome subunit RPN7 0.00096 8 25.30 262 289
PPR PPR repeat 6.3E-07 19 25.00 262 288
PPR_3 Pentatricopeptide repeat domain 4.5E-05 13 25.00 262 296
PPR_2 PPR repeat family 0.00044 10 30.00 262 289
PPR_long Pentacotripeptide-repeat region of PRORP 4.1E-06 16 27.00 265 363
TPR_12 Tetratricopeptide repeat 0.18 2 30.10 266 283
TPR_7 Tetratricopeptide repeat 0.37 1 27.90 267 283
TPR_1 Tetratricopeptide repeat 0.3 1 20.40 267 281
PPR_2 PPR repeat family 1.6E-12 37 30.00 288 336
PPR_3 Pentatricopeptide repeat domain 1.3E-07 21 25.00 289 334
PPR_1 PPR repeat 1.3E-06 18 23.80 290 316
TPR_12 Tetratricopeptide repeat 0.053 4 30.10 290 313
TPR_1 Tetratricopeptide repeat 0.0022 8 20.40 291 313
TPR_14 Tetratricopeptide repeat 0.0056 7 23.50 291 314
PPR PPR repeat 3.3E-10 29 25.00 291 318
TPR_7 Tetratricopeptide repeat 0.28 1 27.90 297 314
ATP13 Mitochondrial ATPase expression 5.5E-05 13 26.70 308 361
PPR PPR repeat 0.04 4 25.00 328 350
PPR_1 PPR repeat 0.68 -1 23.80 358 381
PPR PPR repeat 0.025 5 25.00 441 457

467

ATP13
PPR_1
PPR_2
TPR_12
PPR
PPR_3
RPN7
TPR_14
TPR_7
PPR_long
PPR_1
RPN7
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR_long
TPR_1
PPR_1
PPR_2
PPR_3
PPR
ATP13
PPR_1
RPN7
PPR
PPR_3
PPR_2
PPR_long
TPR_12
TPR_7
TPR_1
PPR_2
PPR_3
PPR_1
TPR_12
TPR_1
TPR_14
PPR
TPR_7
ATP13
PPR
PPR_1
PPR

References:

TPR_7

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

ATP13

PPR_long

TPR_14

TPR_12

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
ATP13	Mitochondrial ATPase expression	0.77	-1	26.70	4	29
PPR_1	PPR repeat	0.017	5	23.80	52	61
PPR_2	PPR repeat family	6.8E-12	35	30.00	52	98
TPR_12	Tetratricopeptide repeat	0.23	2	30.10	52	77
PPR	PPR repeat	4.5E-05	13	25.00	53	79
PPR_3	Pentatricopeptide repeat domain	1.9E-07	21	25.00	54	95
RPN7	26S proteasome subunit RPN7	0.45	0	25.30	54	85
TPR_14	Tetratricopeptide repeat	0.44	2	23.50	56	79
TPR_7	Tetratricopeptide repeat	0.0017	8	27.90	59	86
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0046	6	27.00	67	97
PPR_1	PPR repeat	0.013	5	23.80	82	98
RPN7	26S proteasome subunit RPN7	0.029	4	25.30	126	154
PPR	PPR repeat	0.092	3	25.00	126	147
PPR_3	Pentatricopeptide repeat domain	5.8E-05	13	25.00	143	178
PPR_2	PPR repeat family	4.2E-07	20	30.00	150	178
PPR	PPR repeat	1.1E-08	25	25.00	153	178
PPR_1	PPR repeat	5.9E-05	12	23.80	156	178
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0049	6	27.00	159	233
TPR_1	Tetratricopeptide repeat	0.24	1	20.40	162	177
PPR_1	PPR repeat	8.4E-08	22	23.80	182	209
PPR_2	PPR repeat family	3.8E-12	36	30.00	182	233
PPR_3	Pentatricopeptide repeat domain	0.00017	11	25.00	182	232
PPR	PPR repeat	4E-10	29	25.00	184	212
ATP13	Mitochondrial ATPase expression	0.075	3	26.70	257	285
PPR_1	PPR repeat	0.0039	7	23.80	262	284
RPN7	26S proteasome subunit RPN7	0.00096	8	25.30	262	289
PPR	PPR repeat	6.3E-07	19	25.00	262	288
PPR_3	Pentatricopeptide repeat domain	4.5E-05	13	25.00	262	296
PPR_2	PPR repeat family	0.00044	10	30.00	262	289
PPR_long	Pentacotripeptide-repeat region of PRORP	4.1E-06	16	27.00	265	363
TPR_12	Tetratricopeptide repeat	0.18	2	30.10	266	283
TPR_7	Tetratricopeptide repeat	0.37	1	27.90	267	283
TPR_1	Tetratricopeptide repeat	0.3	1	20.40	267	281
PPR_2	PPR repeat family	1.6E-12	37	30.00	288	336
PPR_3	Pentatricopeptide repeat domain	1.3E-07	21	25.00	289	334
PPR_1	PPR repeat	1.3E-06	18	23.80	290	316
TPR_12	Tetratricopeptide repeat	0.053	4	30.10	290	313
TPR_1	Tetratricopeptide repeat	0.0022	8	20.40	291	313
TPR_14	Tetratricopeptide repeat	0.0056	7	23.50	291	314
PPR	PPR repeat	3.3E-10	29	25.00	291	318
TPR_7	Tetratricopeptide repeat	0.28	1	27.90	297	314
ATP13	Mitochondrial ATPase expression	5.5E-05	13	26.70	308	361
PPR	PPR repeat	0.04	4	25.00	328	350
PPR_1	PPR repeat	0.68	-1	23.80	358	381
PPR	PPR repeat	0.025	5	25.00	441	457