c2pfam

AT2G29760.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.0094 6 23.80 92 105
PPR_3 Pentatricopeptide repeat domain 0.0037 8 25.00 92 140
PPR_2 PPR repeat family 3.6E-07 21 30.00 93 141
PPR PPR repeat 0.0077 7 25.00 97 107
PPR_1 PPR repeat 0.6 0 23.80 127 139
PPR_3 Pentatricopeptide repeat domain 2.5E-05 15 25.00 165 205
PPR_2 PPR repeat family 1.8E-06 19 30.00 165 196
PPR PPR repeat 5.3E-06 17 25.00 170 196
PPR_1 PPR repeat 8.4E-06 16 23.80 170 190
PPR_long Pentacotripeptide-repeat region of PRORP 0.74 -1 27.00 171 197
TPR_1 Tetratricopeptide repeat 0.27 2 20.40 171 185
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.55 1 27.20 172 192
TPR_19 Tetratricopeptide repeat 0.21 3 25.00 172 196
TPR_8 Tetratricopeptide repeat 0.21 3 25.70 174 189
TPR_2 Tetratricopeptide repeat 0.52 1 22.40 175 191
PPR_2 PPR repeat family 2.6E-14 44 30.00 195 244
PPR_1 PPR repeat 1.3E-09 28 23.80 196 224
PPR_3 Pentatricopeptide repeat domain 0.00016 12 25.00 196 229
PPR PPR repeat 7.6E-13 38 25.00 198 227
TPR_1 Tetratricopeptide repeat 0.038 4 20.40 199 222
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.0024 7 19.90 205 328
TPR_14 Tetratricopeptide repeat 0.27 3 23.50 206 226
Coatomer_E Coatomer epsilon subunit 1.5E-06 18 20.40 207 349
TPR_19 Tetratricopeptide repeat 0.14 3 25.00 208 227
TPR_2 Tetratricopeptide repeat 0.65 1 22.40 209 222
PPR_long Pentacotripeptide-repeat region of PRORP 0.00014 12 27.00 214 294
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.27 1 21.90 216 279
AEP1 ATPase expression protein 1 0.0041 7 27.00 219 304
PPR_3 Pentatricopeptide repeat domain 1.8E-06 18 25.00 219 278
TPR_19 Tetratricopeptide repeat 0.21 3 25.00 268 297
PPR_2 PPR repeat family 6.7E-06 17 30.00 270 296
PPR PPR repeat 3.6E-07 21 25.00 271 296
PPR_1 PPR repeat 0.00028 11 23.80 271 294
TPR_14 Tetratricopeptide repeat 1 1 23.50 272 296
Wzy_C_2 Virulence factor membrane-bound polymerase, C-terminal 0.00011 13 28.50 287 356
PPR_2 PPR repeat family 3.7E-07 21 30.00 296 328
PPR_1 PPR repeat 0.00031 11 23.80 297 324
PPR_3 Pentatricopeptide repeat domain 0.00068 10 25.00 297 329
AEP1 ATPase expression protein 1 0.44 0 27.00 298 339
PPR PPR repeat 4.8E-08 23 25.00 299 328
TPR_14 Tetratricopeptide repeat 0.67 2 23.50 301 323
TPR_19 Tetratricopeptide repeat 0.0027 9 25.00 311 358
DNA_pol3_delta DNA polymerase III, delta subunit 0.00039 11 20.50 326 411
PPR_2 PPR repeat family 2.8E-10 31 30.00 327 376
PPR_3 Pentatricopeptide repeat domain 0.00054 10 25.00 327 355
PPR_1 PPR repeat 0.00071 10 23.80 328 354
PPR PPR repeat 1.3E-08 25 25.00 330 356
TPR_1 Tetratricopeptide repeat 0.004 8 20.40 331 349
TPR_14 Tetratricopeptide repeat 0.0061 8 23.50 331 355
TPR_8 Tetratricopeptide repeat 0.85 1 25.70 337 351
TPR_2 Tetratricopeptide repeat 0.11 3 22.40 338 354
PPR_3 Pentatricopeptide repeat domain 5.1E-05 14 25.00 353 410
PPR_long Pentacotripeptide-repeat region of PRORP 0.0091 6 27.00 364 423
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-08 25 27.00 367 526
PPR_3 Pentatricopeptide repeat domain 0.00046 11 25.00 391 429
AEP1 ATPase expression protein 1 0.0045 6 27.00 396 426
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.16 1 19.90 397 457
PPR_2 PPR repeat family 0.004 8 30.00 403 430
PPR PPR repeat 7.5E-06 17 25.00 404 430
TPR_14 Tetratricopeptide repeat 0.22 3 23.50 404 429
PPR_1 PPR repeat 0.018 5 23.80 405 424
TPR_8 Tetratricopeptide repeat 0.077 4 25.70 409 426
PPR_1 PPR repeat 0.0046 7 23.80 429 457
PPR_2 PPR repeat family 1.7E-12 38 30.00 429 477
PPR PPR repeat 1.7E-08 25 25.00 433 462
Coatomer_E Coatomer epsilon subunit 0.69 -1 20.40 447 490
PPR_3 Pentatricopeptide repeat domain 8.3E-06 16 25.00 454 513
PPR_1 PPR repeat 9.7E-05 13 23.80 461 493
PPR PPR repeat 7.3E-08 23 25.00 467 495
PPR_2 PPR repeat family 1.4E-05 16 30.00 467 500
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.00092 9 21.90 488 517
PPR_1 PPR repeat 0.00014 12 23.80 497 528
PPR_2 PPR repeat family 0.036 5 30.00 505 529
PPR PPR repeat 0.0017 9 25.00 505 528
TPR_14 Tetratricopeptide repeat 0.047 5 23.50 537 575
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.003 8 27.20 549 590
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) 0.6 -1 19.90 550 586
TPR_19 Tetratricopeptide repeat 0.0084 7 25.00 556 585
TPR_17 Tetratricopeptide repeat 0.00055 11 24.40 557 584
TPR_8 Tetratricopeptide repeat 0.69 1 25.70 570 583
TPR_2 Tetratricopeptide repeat 0.088 4 22.40 570 585
PPR PPR repeat 0.01 7 25.00 576 596
DYW_deaminase DYW family of nucleic acid deaminases 0 130 31.60 603 728
PPR_3 Pentatricopeptide repeat domain 0.9 0 25.00 633 650

738

PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_long
TPR_1
ANAPC3
TPR_19
TPR_8
TPR_2
PPR_2
PPR_1
PPR_3
PPR
TPR_1
ChAPs
TPR_14
Coatomer_E
TPR_19
TPR_2
PPR_long
ECSIT
AEP1
PPR_3
TPR_19
PPR_2
PPR
PPR_1
TPR_14
Wzy_C_2
PPR_2
PPR_1
PPR_3
AEP1
PPR
TPR_14
TPR_19
DNA_pol3_delta
PPR_2
PPR_3
PPR_1
PPR
TPR_1
TPR_14
TPR_8
TPR_2
PPR_3
PPR_long
PPR_long
PPR_3
AEP1
ChAPs
PPR_2
PPR
TPR_14
PPR_1
TPR_8
PPR_1
PPR_2
PPR
Coatomer_E
PPR_3
PPR_1
PPR
PPR_2
ECSIT
PPR_1
PPR_2
PPR
TPR_14
ANAPC3
ChAPs
TPR_19
TPR_17
TPR_8
TPR_2
PPR
DYW_deaminase
PPR_3

References:

ChAPs
16498409 Arf1p, Chs5p and the ChAPs are required for export of specialized cargo from the Golgi. EMBO J. 2006;25:943-954.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

AEP1

DNA_pol3_delta
11432857 The delta and delta ' subunits of the DNA polymerase III holoenzyme are essential for initiation complex formation and processive elongation. J Biol Chem 2001;276:35165-35175.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

ANAPC3

DYW_deaminase

Wzy_C_2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_14

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.0094	6	23.80	92	105
PPR_3	Pentatricopeptide repeat domain	0.0037	8	25.00	92	140
PPR_2	PPR repeat family	3.6E-07	21	30.00	93	141
PPR	PPR repeat	0.0077	7	25.00	97	107
PPR_1	PPR repeat	0.6	0	23.80	127	139
PPR_3	Pentatricopeptide repeat domain	2.5E-05	15	25.00	165	205
PPR_2	PPR repeat family	1.8E-06	19	30.00	165	196
PPR	PPR repeat	5.3E-06	17	25.00	170	196
PPR_1	PPR repeat	8.4E-06	16	23.80	170	190
PPR_long	Pentacotripeptide-repeat region of PRORP	0.74	-1	27.00	171	197
TPR_1	Tetratricopeptide repeat	0.27	2	20.40	171	185
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.55	1	27.20	172	192
TPR_19	Tetratricopeptide repeat	0.21	3	25.00	172	196
TPR_8	Tetratricopeptide repeat	0.21	3	25.70	174	189
TPR_2	Tetratricopeptide repeat	0.52	1	22.40	175	191
PPR_2	PPR repeat family	2.6E-14	44	30.00	195	244
PPR_1	PPR repeat	1.3E-09	28	23.80	196	224
PPR_3	Pentatricopeptide repeat domain	0.00016	12	25.00	196	229
PPR	PPR repeat	7.6E-13	38	25.00	198	227
TPR_1	Tetratricopeptide repeat	0.038	4	20.40	199	222
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.0024	7	19.90	205	328
TPR_14	Tetratricopeptide repeat	0.27	3	23.50	206	226
Coatomer_E	Coatomer epsilon subunit	1.5E-06	18	20.40	207	349
TPR_19	Tetratricopeptide repeat	0.14	3	25.00	208	227
TPR_2	Tetratricopeptide repeat	0.65	1	22.40	209	222
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00014	12	27.00	214	294
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.27	1	21.90	216	279
AEP1	ATPase expression protein 1	0.0041	7	27.00	219	304
PPR_3	Pentatricopeptide repeat domain	1.8E-06	18	25.00	219	278
TPR_19	Tetratricopeptide repeat	0.21	3	25.00	268	297
PPR_2	PPR repeat family	6.7E-06	17	30.00	270	296
PPR	PPR repeat	3.6E-07	21	25.00	271	296
PPR_1	PPR repeat	0.00028	11	23.80	271	294
TPR_14	Tetratricopeptide repeat	1	1	23.50	272	296
Wzy_C_2	Virulence factor membrane-bound polymerase, C-terminal	0.00011	13	28.50	287	356
PPR_2	PPR repeat family	3.7E-07	21	30.00	296	328
PPR_1	PPR repeat	0.00031	11	23.80	297	324
PPR_3	Pentatricopeptide repeat domain	0.00068	10	25.00	297	329
AEP1	ATPase expression protein 1	0.44	0	27.00	298	339
PPR	PPR repeat	4.8E-08	23	25.00	299	328
TPR_14	Tetratricopeptide repeat	0.67	2	23.50	301	323
TPR_19	Tetratricopeptide repeat	0.0027	9	25.00	311	358
DNA_pol3_delta	DNA polymerase III, delta subunit	0.00039	11	20.50	326	411
PPR_2	PPR repeat family	2.8E-10	31	30.00	327	376
PPR_3	Pentatricopeptide repeat domain	0.00054	10	25.00	327	355
PPR_1	PPR repeat	0.00071	10	23.80	328	354
PPR	PPR repeat	1.3E-08	25	25.00	330	356
TPR_1	Tetratricopeptide repeat	0.004	8	20.40	331	349
TPR_14	Tetratricopeptide repeat	0.0061	8	23.50	331	355
TPR_8	Tetratricopeptide repeat	0.85	1	25.70	337	351
TPR_2	Tetratricopeptide repeat	0.11	3	22.40	338	354
PPR_3	Pentatricopeptide repeat domain	5.1E-05	14	25.00	353	410
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0091	6	27.00	364	423
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-08	25	27.00	367	526
PPR_3	Pentatricopeptide repeat domain	0.00046	11	25.00	391	429
AEP1	ATPase expression protein 1	0.0045	6	27.00	396	426
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.16	1	19.90	397	457
PPR_2	PPR repeat family	0.004	8	30.00	403	430
PPR	PPR repeat	7.5E-06	17	25.00	404	430
TPR_14	Tetratricopeptide repeat	0.22	3	23.50	404	429
PPR_1	PPR repeat	0.018	5	23.80	405	424
TPR_8	Tetratricopeptide repeat	0.077	4	25.70	409	426
PPR_1	PPR repeat	0.0046	7	23.80	429	457
PPR_2	PPR repeat family	1.7E-12	38	30.00	429	477
PPR	PPR repeat	1.7E-08	25	25.00	433	462
Coatomer_E	Coatomer epsilon subunit	0.69	-1	20.40	447	490
PPR_3	Pentatricopeptide repeat domain	8.3E-06	16	25.00	454	513
PPR_1	PPR repeat	9.7E-05	13	23.80	461	493
PPR	PPR repeat	7.3E-08	23	25.00	467	495
PPR_2	PPR repeat family	1.4E-05	16	30.00	467	500
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.00092	9	21.90	488	517
PPR_1	PPR repeat	0.00014	12	23.80	497	528
PPR_2	PPR repeat family	0.036	5	30.00	505	529
PPR	PPR repeat	0.0017	9	25.00	505	528
TPR_14	Tetratricopeptide repeat	0.047	5	23.50	537	575
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.003	8	27.20	549	590
ChAPs	ChAPs (Chs5p-Arf1p-binding proteins)	0.6	-1	19.90	550	586
TPR_19	Tetratricopeptide repeat	0.0084	7	25.00	556	585
TPR_17	Tetratricopeptide repeat	0.00055	11	24.40	557	584
TPR_8	Tetratricopeptide repeat	0.69	1	25.70	570	583
TPR_2	Tetratricopeptide repeat	0.088	4	22.40	570	585
PPR	PPR repeat	0.01	7	25.00	576	596
DYW_deaminase	DYW family of nucleic acid deaminases	0	130	31.60	603	728
PPR_3	Pentatricopeptide repeat domain	0.9	0	25.00	633	650